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Protein Overview: Rtnl1-PJ, Rtnl1-...

General Information:
Name(s) found: Rtnl1-PJ / FBpp0290755 [FlyBase]
Rtnl1-PI / FBpp0290754 [FlyBase]
Rtnl1-PE / FBpp0078676 [FlyBase]
Rtnl1-PB / FBpp0078675 [FlyBase]
Description(s) found:
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  • gi|7296921|gb|AAF52194.1| Rtnl1, isoform E [Drosophila melanogaster] [NCBI NR]
  • gi|28574664|ref|NP_787985.1| Rtnl1, isoform E [Drosophila melanogaster] [NCBI NR]
  • gi|28574662|ref|NP_787984.1| Rtnl1, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|22945622|gb|AAF52197.2| Rtnl1, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|17862200|gb|AAL39577.1| LD14068p [Drosophila melanogaster] [NCBI NR]
  • The gene Rtnl1 is referred to in FlyBase by the symbol Dmel\Rtnl1 (CG33113, FBgn0053113). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:4993641..5009744. It has the cytological map location 25B9-25C1. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: inter-male aggressive behavior; olfactory behavior. 26 alleles are reported. No phenotypic data is available. It has 11 annotated transcripts and 11 annotated polypeptides. [FlyBase]
  • >CG33113-PE translation from_gene[CG33113 CG33113 FBgn0053113] seq_release:3 mol_weight=26152 cds_boundaries:(2L:4,986,782..4,997,260[-]) aa_length:234 transcript_info:[CG33113-RE seq_release:3] gene_info:[gene symbol:CG33113 synonyms:[CG8895 CG18623] [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG33113-PB translation from_gene[CG33113 CG33113 FBgn0053113] seq_release:3 mol_weight=26152 cds_boundaries:(2L:4,986,782..4,997,260[-]) aa_length:234 transcript_info:[CG33113-RB seq_release:3] gene_info:[gene symbol:CG33113 synonyms:[CG8895 CG18623] [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VMW3) CG8895 protein (LD14068p) [DrosMelano7227.FASTAC.txt]
  • (AAF52197) CG33113-PB (CG33113-PE) [DrosMelano7227.FASTAC.txt]
  • (AE003608) CG8895 gene product [alt 1] [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG33113-PE, isoform E [Drosophila melanogaster]gi|22945622|gb|AAF52197.2| CG33113-PB, isoform B [Drosophila melanogaster]gi|17862200|gb|AAL39577.1| LD14068p [Drosophila melanogaster]gi|28574664|ref|NP_787985.1| CG33113-PE [Drosophila melanogaster]gi|2 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG3311 [fly-100309-contam.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG3311 [fly-100309-contam.fasta]
  • LD14068p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Rtnl1 CG33113-PE, isoform E [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Rtnl1 CG33113-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG33113-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG33113-PE, isoform E [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0290754; name=Rtnl1-PI; parent=FBgn0053113,FBtr0301539; dbxref=FlyBase:FBpp0290754,FlyBase_Annotation_IDs:CG33113-PI; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0290755; name=Rtnl1-PJ; parent=FBgn0053113,FBtr0301540; dbxref=FlyBase:FBpp0290755,FlyBase_Annotation_IDs:CG33113-PJ; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD14068p OS=Drosophila melanogaster GN=Rtnl1 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194,FlyMine:FBpp0078676,modMine:FBpp0078676; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0290754; name=Rtnl1-PI; parent=FBgn0053113,FBtr0301539; dbxref=REFSEQ:NP_001162876,GB_protein:ACZ94167,FlyBase:FBpp0290754,FlyBase_Annotation_IDs:CG33113-PI; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(4994208..4994277,4994339..4994444,4994508..4994716,4994787..4994994,5004172..5004207,5004614..5004689); ID=FBpp0290755; name=Rtnl1-PJ; parent=FBgn0053113,FBtr0301540; dbxref=REFSEQ:NP_001162877,GB_protein:ACZ94168,FlyBase:FBpp0290755,FlyBase_Annotation_IDs:CG33113-PJ; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194,FlyMine:FBpp0078676,modMine:FBpp0078676; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290754; name=Rtnl1-PI; parent=FBgn0053113,FBtr0301539; dbxref=REFSEQ:NP_001162876,GB_protein:ACZ94167,FlyBase:FBpp0290754,FlyBase_Annotation_IDs:CG33113-PI; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290755; name=Rtnl1-PJ; parent=FBgn0053113,FBtr0301540; dbxref=REFSEQ:NP_001162877,GB_protein:ACZ94168,FlyBase:FBpp0290755,FlyBase_Annotation_IDs:CG33113-PJ; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194,FlyMine:FBpp0078676,modMine:FBpp0078676; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290754; name=Rtnl1-PI; parent=FBgn0053113,FBtr0301539; dbxref=REFSEQ:NP_001162876,GB_protein:ACZ94167,FlyBase:FBpp0290754,FlyBase_Annotation_IDs:CG33113-PI; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290755; name=Rtnl1-PJ; parent=FBgn0053113,FBtr0301540; dbxref=REFSEQ:NP_001162877,GB_protein:ACZ94168,FlyBase:FBpp0290755,FlyBase_Annotation_IDs:CG33113-PJ; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of E1JHT6, Reticulon-like protein OS=Drosophila melanogaster GN=Rtnl1 PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0078676 type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194,FlyMine:FBpp0078676,modMine:FBpp0078676; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0078675 type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0290754 type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290754; name=Rtnl1-PI; parent=FBgn0053113,FBtr0301539; dbxref=REFSEQ:NP_001162876,GB_protein:ACZ94167,FlyBase:FBpp0290754,FlyBase_Annotation_IDs:CG33113-PI; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0290755 type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290755; name=Rtnl1-PJ; parent=FBgn0053113,FBtr0301540; dbxref=REFSEQ:NP_001162877,GB_protein:ACZ94168,FlyBase:FBpp0290755,FlyBase_Annotation_IDs:CG33113-PJ; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078676; name=Rtnl1-PE; parent=FBgn0053113,FBtr0079040; dbxref=FlyBase:FBpp0078676,FlyBase_Annotation_IDs:CG33113-PE,GB_protein:AAF52194.1,REFSEQ:NP_787985,GB_protein:AAF52194,UniProt/TrEMBL:Q7KTP4,FlyMine:FBpp0078676,modMine:FBpp0078676; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0078675; name=Rtnl1-PB; parent=FBgn0053113,FBtr0079039; dbxref=FlyBase:FBpp0078675,FlyBase_Annotation_IDs:CG33113-PB,GB_protein:AAF52197.2,REFSEQ:NP_787984,GB_protein:AAF52197,UniProt/TrEMBL:Q7KTP4; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290754; name=Rtnl1-PI; parent=FBgn0053113,FBtr0301539; dbxref=REFSEQ:NP_001162876,GB_protein:ACZ94167,FlyBase:FBpp0290754,FlyBase_Annotation_IDs:CG33113-PI,UniProt/TrEMBL:Q7KTP4; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:complement(join(5004614..5004689,5004172..5004207,4994787..4994994,4994508..4994716,4994339..4994444,4994208..4994277)); ID=FBpp0290755; name=Rtnl1-PJ; parent=FBgn0053113,FBtr0301540; dbxref=REFSEQ:NP_001162877,GB_protein:ACZ94168,FlyBase:FBpp0290755,FlyBase_Annotation_IDs:CG33113-PJ,UniProt/TrEMBL:Q7KTP4; MD5=84cd3cbdf8b096180aba599fd867fb77; length=234; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 234 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytoplasm [IDA]
    endoplasmic reticulum [IEA]
    Biological Process: olfactory behavior [IMP]
    inter-male aggressive behavior [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFGETGQN GVCKQRPLIC SILDPNAWFK PERLHPQVES LIYWRDVKKS GIVFGAGLIT  60
   61 LAAISSFSVI SVFAYLSLLT LFGTVAFRIY KSVTQAVQKT NEGHPFKDYL ELDLTLSHEK 120
  121 VQNIAGVAVA HINGFISELR RLFLVEDIID SIKFGVILWV FTYVGAWFNG MTLVILAFVS 180
  181 LFTLPKVYEN NKQSIDTHLD LVRSKLTEIT DKIRVAIPIG NKKPEAAAES EKDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] deduced N/A No confident structure predictions are available.
    2 View Details [100..146] PSI-BLAST 15.69897 No description for 2g31A was found.
    3 View Details [147..234] MSA 3.127992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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