YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rtnl1-PJ, Rtnl1-...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFGETGQN GVCKQRPLIC SILDPNAWFK PERLHPQVES LIYWRDVKKS GIVFGAGLIT  60
   61 LAAISSFSVI SVFAYLSLLT LFGTVAFRIY KSVTQAVQKT NEGHPFKDYL ELDLTLSHEK 120
  121 VQNIAGVAVA HINGFISELR RLFLVEDIID SIKFGVILWV FTYVGAWFNG MTLVILAFVS 180
  181 LFTLPKVYEN NKQSIDTHLD LVRSKLTEIT DKIRVAIPIG NKKPEAAAES EKDK

Type	Start	End	Confidence
Cytoplasmic	1	51	0.95
Transmembrane Helix	52	76	0.90
Non-Cytoplasmic	77	162	0.81
Transmembrane Helix	163	184	0.87
Cytoplasmic	185	234	0.77