Protein Overview: gi|186910257, gi...

General Information:
Name(s) found:	gi\|186910257 [NCBI NR] gi\|149064955 [NCBI NR] gi\|109473099 [NCBI NR] gi\|109471729 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|186910257\|ref\|NP_001119562.1\| split hand/foot malformation (ectrodactyly) type 1 [Rattus norvegicus] [NCBI NR] gi\|149064955\|gb\|EDM15031.1\| rCG28037 [Rattus norvegicus] [NCBI NR] gi\|109473099\|ref\|XP_001054221.1\| PREDICTED: similar to 26 proteasome complex subunit DSS1 (Deleted in split hand/split foot protein 1) (Split hand/foot deleted protein 1 homolog) [Rattus norvegicus] [NCBI NR] gi\|109471729\|ref\|XP_001057613.1\| PREDICTED: similar to 26 proteasome complex subunit DSS1 (Deleted in split hand/split foot protein 1) (Split hand/foot deleted protein 1 homolog) [Rattus norvegicus] [NCBI NR] Ensembl_locations(Chr-bp):4-31742920 [hmr_yeast5_DM3-1_pombe.fasta] Tax_Id=10116 8 kDa protein [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] split hand/foot malformation (ectrodactyly) type 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] rCG28037 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 8KDA PROTEIN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] PREDICTED: similar to 26 proteasome complex subunit DSS1 (Deleted in split hand/split foot protein 1) (Split hand/foot deleted protein 1 homolog) [Rattus norvegicus] [nr-271106-contam.fasta] Tax_Id=10116 Gene_Symbol=Shfm1 split hand/foot malformation (ectrodactyly) type 1 [rat-ipi-250309-contam.fasta] RCG28037 OS=Rattus norvegicus GN=Shfm1 [011711_HMR.fasta] RCG28037 OS=Rattus norvegicus GN=Shfm1 PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta] Protein Shfm1 OS=Rattus norvegicus GN=Shfm1 PE=4 SV=1 [Aridor_1205.fasta] Protein Shfm1 OS=Rattus norvegicus GN=Shfm1 PE=1 SV=1 [RAT.fasta.20160308]
Organism:	Rattus norvegicus
Length:	70 amino acids
Gene Ontology:
Cellular Component:	proteasome complex [UNKNOWN] integrator complex [UNKNOWN]
Biological Process:	proteolysis [UNKNOWN] double-strand break repair via homologous recombination [UNKNOWN]
Molecular Function:	protein binding [UNKNOWN] peptidase activity [UNKNOWN]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MSEKKQPVDL GLLEEDDEFE EFPAEDWAGL DEDEDAHVWE DNWDDDNVED DFSNQLRAEL 60 61 EKHGYKMETS

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..70]	Pfam	34.309804	No description for PF05160.4 was found. No confident structure predictions are available.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle