YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CXCL5_RAT

General Information:
Name(s) found: CXCL5_RAT [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|2829847|sp|P97885.1|CXCL5_RAT RecName: Full=C-X-C motif chemokine 5; AltName: Full=Small-inducible cytokine B5; AltName: Full=Cytokine LIX; Flags: Precursor [NCBI NR]
  • gi|1899248|gb|AAB61460.1| CXC chemokine LIX [Rattus norvegicus] [NCBI NR]
  • gi|11559996|ref|NP_071550.1| CXC chemokine LIX [Rattus norvegicus] [NCBI NR]
  • (P97885) Small inducible cytokine B5 precursor (CXCL5) (Cytokine LIX) [Swiss-Prot]
  • Small-inducible cytokine B5 precursor - Rattus norvegicus (Rat) [Swiss-Prot]
  • C-X-C motif chemokine 5 OS=Rattus norvegicus GN=Cxcl5 PE=2 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):14-17577142 Small inducible cytokine B5 precursor [hmr_yeast5_DM3-1_pombe.fasta]
  • CXC chemokine LIX [HMR_022704-rand.fasta]
  • CXC chemokine LIX [Rattus norvegicus]gi|1899248|gb|AAB61460.1| CXC chemokine LIX [Rattus norvegicus]gi|2829847|sp|P97885|SZ05_RAT Small inducible cytokine B5 precursor (CXCL5) (Cytokine LIX) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Small inducible cytokine B5 precursor [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • (NM_022214) CXC chemokine LIX [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • C-X-C motif chemokine 5 precursor (Small-inducible cytokine B5) (Cytokine LIX) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • CXC chemokine LIX [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 SMALL INDUCIBLE CYTOKINE B5 PRECURSOR [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Small inducible cytokine B5 precursor (CXCL5) (Cytokine LIX) [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Cxcl6 C-X-C motif chemokine 5 [rat-ipi-250309-contam.fasta]
  • C-X-C motif chemokine 5 OS=Rattus norvegicus GN=Cxcl5 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 130 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IEA]
    extracellular region [IEA]
    Biological Process: inflammatory response [IMP]
    immune response [IEA]
    cytokine production [IMP]
    Molecular Function: chemokine activity [IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQLRSSAR IPSRSCSSFT LLAFLLLFTL PQHRAQAAPF SAMVATELRC VCLTLAPRIN  60
   61 PKMIANLEVI PAGPHCPKVE VIAKLKNQKD NVCLDPQAPL IKKVIQKILG SENKKTKRNA 120
  121 LALVRSASTQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] PSI-BLAST 16.045757 Neutrophil-activating peptide-2 (NAP-2)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle