YRC Public Data Repository - Protein Structure Prediction

Protein:	CXCL5_RAT
Organism:	Rattus norvegicus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CXCL5_RAT.

Description	E-value	Query Range	Subject Range
CXCL5_MOUSE - C-X-C motif chemokine 5 OS=Mus musculus GN=Cxcl5 PE=1 SV=2	109.0	[0..1]	[130..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	102.0	[0..18]	[112..1]
CCL3_RAT - C-C motif chemokine 3 OS=Rattus norvegicus GN=Ccl3 PE=1 SV=1	101.0	[0..18]	[112..1]
gi\|55977442 - gi\|55977442\|gb\|AAV68490.1\| CCL3/MIP1alpha [Mesocricetus auratus]	99.0	[0..18]	[118..1]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	98.0	[0..16]	[117..1]
CCL4_BOVIN - C-C motif chemokine 4 OS=Bos taurus GN=CCL4 PE=3 SV=1	96.0	[0..18]	[111..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	96.0	[0..18]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQLRSSAR IPSRSCSSFT LLAFLLLFTL PQHRAQAAPF SAMVATELRC VCLTLAPRIN  60
   61 PKMIANLEVI PAGPHCPKVE VIAKLKNQKD NVCLDPQAPL IKKVIQKILG SENKKTKRNA 120
  121 LALVRSASTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	1tvxA
Description:	Neutrophil-activating peptide-2 (NAP-2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits