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Protein Overview: RS4X_RAT

General Information:
Name(s) found: RS4X_RAT [Swiss-Prot]
Description(s) found:
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  • pir||R3RT4 ribosomal protein S4, cytosolic [validated] - rat [NCBI NR]
  • gi|56090273|ref|NP_001007601.1| ribosomal protein S4, X-linked [Rattus norvegicus] [NCBI NR]
  • gi|55824731|gb|AAH86560.1| Ribosomal protein S4, X-linked [Rattus norvegicus] [NCBI NR]
  • gi|50403621|sp|P62703.2|RS4X_RAT RecName: Full=40S ribosomal protein S4, X isoform [NCBI NR]
  • gi|149042162|gb|EDL95869.1| rCG36441 [Rattus norvegicus] [NCBI NR]
  • 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):4-39466083 [hmr_yeast5_DM3-1_pombe.fasta]
  • ribosomal protein S4, X-linked [Mus musculus]gi|4506725|ref|NP_000998.1| ribosomal protein S4, X-linked X isoform [Homo sapiens]gi|48735278|gb|AAH71662.1| Ribosomal protein S4, X-linked, X isoform [Homo sapiens]gi|14318606|gb|AAH09100.1| Ribosomal prot [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Ensembl_locations(Chr-bp):4-39466083 [EBI-IPI_Drosophila_na_12-13-2007_con_reversed.fasta]
  • 40S ribosomal protein S4, X isoform [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • ribosomal protein S4, X-linked [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG36441 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Ribosomal protein S4, X-linked [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 29KDA PROTEIN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Rps4x 40S ribosomal protein S4, X isoform [rat-ipi-250309-contam.fasta]
  • 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 263 amino acids

    Gene Ontology:
    Cellular Component: polysome [UNKNOWN][IEA]
    ribonucleoprotein complex [UNKNOWN][ISS]
    cytoplasm [IEA]
    cytosolic small ribosomal subunit [UNKNOWN]
    cytosol [UNKNOWN]
    small ribosomal subunit [UNKNOWN]
    ribosome [UNKNOWN][ISS]
    cellular_component [ND]
    intracellular [IEA]
    Biological Process: biological_process [ND]
    positive regulation of translation [UNKNOWN][IEA]
    multicellular organismal development [UNKNOWN][IEA]
    positive regulation of cell proliferation [UNKNOWN][IEA]
    translational elongation [UNKNOWN]
    translation [UNKNOWN]
    Molecular Function: structural constituent of ribosome [UNKNOWN][IEA]
    rRNA binding [IEA]
    molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPKKHLK RVAAPKHWML DKLTGVFAPR PSTGPHKLRE CLPLIIFLRN RLKYALTGDE  60
   61 VKKICMQRFI KIDGKVRTDI TYPAGFMDVI SIDKTGENFR LIYDTKGRFA VHRITPEEAK 120
  121 YKLCKVRKIF VGTKGIPHLV THDARTIRYP DPLIKVNDTI QIDLETGKIT DFIKFDTGNL 180
  181 CMVTGGANLG RIGVITNRER HPGSFDVVHV KDANGNSFAT RLSNIFVIGK GNKPWISLPR 240
  241 GKGIRLTIAE ERDKRLAAKQ SSG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..67] MSA 2.04997 View MSA. No confident structure predictions are available.
    2 View Details [68..177] Pfam 43.920819 No description for PF00900.11 was found. Confident ab initio structure predictions are available.
    3 View Details [178..263] MSA 5.052991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle