Protein Overview: YBOX1_RAT

General Information:
Name(s) found:	YBOX1_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|92373398\|ref\|NP_113751.3\| Y box binding protein 1 [Rattus norvegicus] [NCBI NR] gi\|68533639\|gb\|AAH98672.1\| Y box binding protein 1 [Rattus norvegicus] [NCBI NR] gi\|51704186\|sp\|P62961.3\|YBOX1_RAT RecName: Full=Nuclease-sensitive element-binding protein 1; AltName: Full=Y-box-binding protein 1; AltName: Full=Y-box transcription factor; AltName: Full=YB-1; AltName: Full=CCAAT-binding transcription factor I subunit A [NCBI NR] gi\|47938951\|gb\|AAH72486.1\| Y box binding protein 1 [Rattus norvegicus] [NCBI NR] gi\|149035444\|gb\|EDL90125.1\| rCG50488, isoform CRA_b [Rattus norvegicus] [NCBI NR] Nuclease-sensitive element-binding protein 1 OS=Rattus norvegicus GN=Ybx1 PE=2 SV=3 [Swiss-Prot] (P62961) Nuclease sensitive element binding protein 1 (Y box binding protein-1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) [Swiss-Prot] Ensembl_locations(Chr-bp):5-165861446 Nuclease sensitive element binding protein 1 [hmr_yeast5_DM3-1_pombe.fasta] Nsep1 protein [Mus musculus]gi\|20987294\|gb\|AAH29747.1\| Nuclease sensitive element binding protein 1 [Mus musculus]gi\|38197295\|gb\|AAH61634.1\| Nuclease sensitive element binding protein 1 [Mus musculus]gi\|15488612\|gb\|AAH13450.1\| Nuclease sensitive elemen [nrdb_11152004_Chlamydomonas] Tax_Id=10116 Nuclease sensitive element binding protein 1 [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta] Tax_Id=10116 Ensembl_locations(Chr-bp):5-165861446 Nuclease sensitive element binding protein 1 [EBI-IPI_Drosophila_na_12-13-2007_con_reversed.fasta] Nuclease-sensitive element-binding protein 1 (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Y box protein 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] rCG50488, isoform CRA_b [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 NUCLEASE SENSITIVE ELEMENT BINDING PROTEIN 1 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] Y box binding protein 1 [Rattus norvegicus] [NCBI-RefSeq_human-rat_na_04-07-2009_con_reversed.fasta] Nuclease sensitive element-binding protein 1 (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) [nr-271106-contam.fasta] nuclease sensitive element binding protein 1 [Rattus norvegicus] [nr-271106-contam.fasta] Tax_Id=10116 Gene_Symbol=Ybx1 Nuclease-sensitive element-binding protein 1 [rat-ipi-250309-contam.fasta] Nuclease-sensitive element-binding protein 1 OS=Rattus norvegicus GN=Ybx1 PE=1 SV=3 [UNIPROT_RAT_07-21-2011_reversed.fasta]
Organism:	Rattus norvegicus
Length:	322 amino acids
Gene Ontology:
Cellular Component:	CRD-mediated mRNA stability complex [UNKNOWN] nucleus [IDA] dendrite [IDA] stress granule [UNKNOWN][ISS] perinuclear region of cytoplasm [IDA] ribonucleoprotein complex [UNKNOWN][ISS] cytoplasm [IDA] histone pre-mRNA 3'end processing complex [ISS]
Biological Process:	negative regulation of transcription from RNA polymerase II promoter [IDA] RNA splicing [UNKNOWN][IEA] in utero embryonic development [UNKNOWN] negative regulation of apoptosis [IDA] positive regulation of cell proliferation [IMP] regulation of transcription, DNA-dependent [IEA] mRNA processing [IEA] positive regulation of transcription from RNA polymerase II promoter [IMP] negative regulation of insulin receptor signaling pathway [IMP] CRD-mediated mRNA stabilization [UNKNOWN]
Molecular Function:	DNA binding [IEA] p53 binding [IMP] protein binding [UNKNOWN] mRNA binding [IPI] sequence-specific DNA binding [IDA] single-stranded DNA binding [UNKNOWN][IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEAETQQP PAAPAAALSA ADTKPGSTGS GAGSGGPGGL TSAAPAGGDK KVIATKVLGT  60
   61 VKWFNVRNGY GFINRNDTKE DVFVHQTAIK KNNPRKYLRS VGDGETVEFD VVEGEKGAEA 120
  121 ANVTGPGGVP VQGSKYAADR NHYRRYPRRR GPPRNYQQNY QNSESGEKNE GSESAPEGQA 180
  181 QQRRPYRRRR FPPYYMRRPY ARRPQYSNPP VQGEVMEGAD NQGAGEQGRP VRQNMYRGYR 240
  241 PRFRRGPPRQ RQPREDGNEE DKENQGDETQ GQQPPQRRYR RNFNYRRRRP ENPKPQDGKE 300
  301 TKAADPPAEN SSAPEAEQGG AE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.86

Protein Overview: YBOX1_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: