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Protein Overview: gi|125535848

General Information:
Name(s) found: gi|125535848 [NCBI NR]
Description(s) found:
  • gi|125535848|gb|EAY82336.1| hypothetical protein OsI_37545 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAGAGSSE VAARVLLQRY QPFAPPPGEY HQFGSGGAAA AGDMTEAVLI RTPLKRKHDR  60
   61 EENEAAESND WMMSPGYTNP AGSPVPTPLS GKGSKAFAKS KAAKGQKSCP QTPLCASSPG 120
  121 NPVTPVGGCR YDSSLGLLTK KFLNLLKGAP GGIVDLNNAA ETLEVQKRRI YDITNVLEGI 180
  181 GLIEKKLKNN IRWKGIDDSR PGEVSDDMSI LQADIEALSL QEHSVDQQIS EMRDKLRGLT 240
  241 EDENNQKWLY VTEDDIKSLP CFQNQTLIAI KAPHGTTLEV PDPDEVNDYP QRRYRIVLRS 300
  301 TMGPIDVYLV SQFEEMSGME TPPRTVQPVS MDSLENPRTP LAAEPNKAAE SQPNIQDGLL 360
  361 MPSDAPSSSQ DIGGMMKIVP SELDTDADYW LLSDAGVSIT DMWKTAPEVE WEGIEKFNAE 420
  421 DFLEVSTPRQ QDKPSSDIMD GDSCIS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] MSA 2.090992 View MSA. No confident structure predictions are available.
    2 View Details [117..199] PSI-BLAST 23.09691 Cell cycle transcription factor E2F-4
    3 View Details [200..345] PSI-BLAST 27.39794 Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer
    4 View Details [346..446] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.98990675336286 bayes_pls_golite062009
  • DNA binding
    		•  3.4273272886116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38054693035398 bayes_pls_golite062009
  • transcription factor activity
    		•  2.80110428028438 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.58663416877618 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.513853050429619 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle