| Protein: | gi|125535848 |
| Organism: | Oryza sativa Indica Group |
| Length: | 446 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125535848.
| Description | E-value | Query Range |
Subject Range |
|
|
410.0 | [0..1] | [406..1] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MAAAGAGSSE VAARVLLQRY QPFAPPPGEY HQFGSGGAAA AGDMTEAVLI RTPLKRKHDR 60
61 EENEAAESND WMMSPGYTNP AGSPVPTPLS GKGSKAFAKS KAAKGQKSCP QTPLCA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [117-199] |
1 11 21 31 41 51
| | | | | |
1 SSPGNPVTPV GGCRYDSSLG LLTKKFLNLL KGAPGGIVDL NNAAETLEVQ KRRIYDITNV 60
61 LEGIGLIEKK LKNNIRWKGI DDS
|
| Detection Method: | |
| Confidence: | 23.09691 |
| Match: | 1cf7A |
| Description: | Cell cycle transcription factor E2F-4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.98990675336286 | bayes_pls_golite062009 |
| DNA binding | 3.4273272886116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38054693035398 | bayes_pls_golite062009 |
| transcription factor activity | 2.80110428028438 | bayes_pls_golite062009 |
| binding | 2.18911933843505 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.58663416877618 | bayes_pls_golite062009 |
| transcription activator activity | 0.53294679084865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.53285802828572 | bayes_pls_golite062009 |
| transcription repressor activity | 0.513853050429619 | bayes_pls_golite062009 |
| protein binding | 0.035220363090062 | bayes_pls_golite062009 |
|
Region A: Residues: [200-345] |
1 11 21 31 41 51
| | | | | |
1 RPGEVSDDMS ILQADIEALS LQEHSVDQQI SEMRDKLRGL TEDENNQKWL YVTEDDIKSL 60
61 PCFQNQTLIA IKAPHGTTLE VPDPDEVNDY PQRRYRIVLR STMGPIDVYL VSQFEEMSGM 120
121 ETPPRTVQPV SMDSLENPRT PLAAEP
|
| Detection Method: | |
| Confidence: | 27.39794 |
| Match: | 2azeA |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-446] |
1 11 21 31 41 51
| | | | | |
1 NKAAESQPNI QDGLLMPSDA PSSSQDIGGM MKIVPSELDT DADYWLLSDA GVSITDMWKT 60
61 APEVEWEGIE KFNAEDFLEV STPRQQDKPS SDIMDGDSCI S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
