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Protein Overview: gi|120603279, gi...

General Information:
Name(s) found: gi|120603279 [NCBI NR]
gi|120563508 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|120603279|ref|YP_967679.1| uroporphyrin-III C-methyltransferase [Desulfovibrio vulgaris subsp. vulgaris DP4] [NCBI NR]
  • gi|120563508|gb|ABM29252.1| uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase [Desulfovibrio vulgaris subsp. vulgaris DP4] [NCBI NR]
    • Organism: Desulfovibrio vulgaris DP4
    Length: 503 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVYLIGAGP GDPGLLTLKG KEILERADVV VYDFLANDAF LAYAKPDAEI IYVGKKGGDH  60
   61 TLSQDGINRL IIEKAKEGKV VARLKGGDPY MFGRGGEEAE ELLDAGVPFE EVPGVTSAIA 120
  121 GPAYAGIPLT HRSYASSVSF ITGHENPDKP DSAHNWQALA AGTSTLVFFM GMKNLPDISR 180
  181 KLIAAGMSPD KPAALVRWGT TPRHRSLVAT IATLPEEAVK HGFSNPSLIV VGDVVRLRDR 240
  241 LNWFEHKPLL GKGVVVTRAR EQASGLAAAL RELGADVIQF PTIDIHPLDD YAPVHEAIRA 300
  301 LDTYDWVVFT SVNGVKHFWN QLAALGLDSR ALGGRKVAAI GPATADALRD KGIAPDFIPE 360
  361 KYVAEGVVEG MLARGMGGKR VLLPRALEAR EVLPEELRKA GATVDVLPVY VTVPSAARRD 420
  421 DVLARMEAGE VHCVTFGSSS TVENFFSLVP ADTVKAHPEV KLACIGPVTK KTLEGFGFTC 480
  481 HIQPDDYTIP ALVDELTRVL PEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..253] PSI-BLAST 62.0 Structure and function of CysG, the multifunctional methyltransferase/dehydrogenase/ferrochelatase for siroheme synthesis
    2 View Details [254..503] PSI-BLAST 41.0 Uroporphyrinogen III synthase (U3S, HemD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uroporphyrin-III C-methyltransferase activity
    		•  3.573271502205 bayes_pls_golite062009
  • C-methyltransferase activity
    		•  3.35393353163232 bayes_pls_golite062009
  • precorrin-4 C11-methyltransferase activity
    		•  2.18371138649366 bayes_pls_golite062009
  • catalytic activity
    		•  1.48349578618275 bayes_pls_golite062009
  • transferase activity
    		•  0.912524944496351 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.431791521097299 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.424918406685891 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.28351517300952 bayes_pls_golite062009
  • uroporphyrinogen-III synthase activity
    		•  0.00871858903098705 bayes_pls_golite062009
    2
    Term Confidence Notes
  • uroporphyrinogen-III synthase activity
    		•  3.34629127241283 bayes_pls_golite062009
  • catalytic activity
    		•  1.13824203225664 bayes_pls_golite062009
  • lyase activity
    		•  0.352588988142348 bayes_pls_golite062009
  • hydro-lyase activity
    		•  0.290711782955013 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.212880565996123 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle