YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: HXB8_RAT

General Information:
Name(s) found: HXB8_RAT [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • Homeobox protein Hox-B8 (Fragment) OS=Rattus norvegicus GN=Hoxb8 PE=2 SV=2 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 92 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: grooming behavior [UNKNOWN]
    multicellular organismal development [IEA]
    dorsal spinal cord development [UNKNOWN]
    anterior/posterior pattern formation [UNKNOWN]
    regulation of transcription, DNA-dependent [IEA]
    sensory perception of pain [UNKNOWN]
    adult locomotory behavior [UNKNOWN]
    skeletal system morphogenesis [UNKNOWN]
    embryonic skeletal system morphogenesis [UNKNOWN]
    Molecular Function: transcription factor activity [IEA]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLSPIPSSRR TQRGRQTYSR YQTLELEKEF LFNPYLTRKR RIEVSHALGL TERQVKIWFQ  60
   61 NRRMKWKKEN NKDKFPSSKC EQEELEKEKL ER

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] PSI-BLAST 15.69897 Ultrabithorax (ubx) homeodomain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  1.26571574724964 bayes_pls_golite062009
  • binding
    		•  1.25140430108186 bayes_pls_golite062009
  • DNA binding
    		•  1.04913281181737 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.787927191745053 bayes_pls_golite062009
  • transcription factor activity
    		•  0.77563923452142 bayes_pls_golite062009
  • protein binding
    		•  0.134872960372588 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle