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Protein Overview: gi|125543425

General Information:
Name(s) found: gi|125543425 [NCBI NR]
Description(s) found:
  • gi|125543425|gb|EAY89564.1| hypothetical protein OsI_11096 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 508 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGNAKGGGH SEALKNYNLG RTLGIGSFGK VKIAEHKLTG HRVAIKILNR RQMRNMEMEE  60
   61 KAKREIKILR LFIHPHIIRL YEVIYTPTDI YVVMEYCKFG ELFDYIVEKG RLQEDEARRI 120
  121 FQQIISGVEY CHRNMVVHRD LKPENLLLDS KYNVKLADFG LSNVMHDGHF LKTSCGSPNY 180
  181 AAPEVISGKL YAGPEVDVWS CGVILYALLC GTLPFDDENI PNLFKKIKGG IYTLPSHLSA 240
  241 LARDLIPRML VVDPMKRITI REIREHQWFQ IRLPRYLAVP PPDTAQQAKM IDEDTLQDVV 300
  301 NLGYGKDHVC ESLRNRLQNE ATVAYYLLLD NRFRATSGYL GADYQESLER NFNRFASSES 360
  361 ASSNTRHYLP GSSDPHASGL RPHYPVERKW ALGLQSRAQP REIMIEVLKA LQDLNVSWKK 420
  421 NGQYNMKCRW SVGTQATDML DVNNSFVDDS IIMDNGDVNG RLPAVIKFEI QLYKTRDEKY 480
  481 LLDMQRVTGP QLLFLDFCAD FLTKLRVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..282] PSI-BLAST 79.522879 No description for 2h6dA was found.
    2 View Details [283..340] FFAS03 1.11 Solution structure of RSGI RUH-031, a UBA domain from human cDNA
    3 View Details [341..508] PSI-BLAST 14.39794 No description for 2qlvA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  2.36949910682766 bayes_pls_golite062009
  • binding
    		•  2.36429435103114 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.22074627311461 bayes_pls_golite062009
  • protein binding
    		•  2.06619290708535 bayes_pls_golite062009
  • DNA binding
    		•  2.0124319122573 bayes_pls_golite062009
  • enzyme binding
    		•  0.973545763884891 bayes_pls_golite062009
  • kinase binding
    		•  0.968076648791321 bayes_pls_golite062009
  • small conjugating protein binding
    		•  0.678408535705177 bayes_pls_golite062009
  • protein kinase binding
    		•  0.608887392085144 bayes_pls_golite062009
  • ubiquitin binding
    		•  0.319972124839967 bayes_pls_golite062009
  • catalytic activity
    		•  0.2736776367506 bayes_pls_golite062009
  • transcription factor binding
    		•  0.00604949932390486 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle