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Protein Overview: gi|123980542, gi...

General Information:
Name(s) found: gi|123995361 [NCBI NR]
gi|123980542 [NCBI NR]
Description(s) found:
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  • gi|123995361|gb|ABM85282.1| WW domain containing E3 ubiquitin protein ligase 2 [synthetic construct] [NCBI NR]
  • gi|123980542|gb|ABM82100.1| WW domain containing E3 ubiquitin protein ligase 2 [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 870 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASSSRAG VALPFEKSQL TLKVVSAKPK VHNRQPRINS YVEVAVDGLP SETKKTGKRI  60
   61 GSSELLWNEI IILNVTAQSH LDLKVWSCHT LRNELLGTAS VNLSNVLKNN GGKMENMQLT 120
  121 LNLQTENKGS VVSGGELTIF LDGPTVDLGN VPNGSALTDG SQLPSRDSSG TAVAPENRHQ 180
  181 PPSTNCFGGR SRTHRHSGAS ARTTPATGEQ SPGARSRHRQ PVKNSGHSGL ANGTVNDEPT 240
  241 TATDPEEPSV VGVTSPPAAP LSVTPNPNTT SLPAPATPAE GEEPSTSGTQ QLPAAAQAPD 300
  301 ALPAGWEQRE LPNGRVYYVD HNTKTTTWER PLPPGWEKRT DPRGRFYYVD HNTRTTTWQR 360
  361 PTAEYVRNYE QWQSQRNQLQ GAMQHFSQRF LYQSSSASTD HDPLGPLPPG WEKRQDNGRV 420
  421 YYVNHNTRTT QWEDPRTQGM IQEPALPPGW EMKYTSEGVR YFVDHNTRTT TFKDPRPGFE 480
  481 SGTKQGSPGA YDRSFRWKYH QFRFLCHSNA LPSHVKISVS RQTLFEDSFQ QIMNMKPYDL 540
  541 RRRLYIIMRG EEGLDYGGIA REWFFLLSHE VLNPMYCLFE YAGKNNYCLQ INPASSINPD 600
  601 HLTYFRFIGR FIAMALYHGK FIDTGFTLPF YKRMLNKRPT LKDLESIDPE FYNSIVWIKE 660
  661 NNLEECGLEL YFIQDMEILG KVTTHELKEG GESIRVTEEN KEEYIMLLTD WRFTRGVEEQ 720
  721 TKAFLDGFNE VAPLEWLRYF DEKELELMLC GMQEIDMSDW QKSTIYRHYT KNSKQIQWFW 780
  781 QVVKEMDNEK RIRLLQFVTG TCRLPVGGFA ELIGSNGPQK FCIDKVGKET WLPRSHTCFN 840
  841 RLDLPPYKSY EQLREKLLYA IEETEGFGQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 14.0 No description for 2nq3A was found.
    2 View Details [166..285] FFAS03 1.84 No description for 2j63A was found.
    3 View Details [286..370] PSI-BLAST 3.39794 NMR structure of WW domains (WW3-4) from Suppressor of Deltex
    4 View Details [371..469] FFAS03 3.79 NMR structure of WW domains (WW3-4) from Suppressor of Deltex
    5 View Details [470..870] PSI-BLAST 154.0 Conformational Flexibility Underlies Ubiquitin Ligation Mediated by the WWP1 HECT domain E3 Ligase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.77482286467294 bayes_pls_golite062009
  • calcium-dependent phospholipid binding
    		•  1.9375710282475 bayes_pls_golite062009
  • lipid binding
    		•  1.47484095830847 bayes_pls_golite062009
  • protein binding
    		•  1.33917246836907 bayes_pls_golite062009
  • phospholipid binding
    		•  1.01018855528345 bayes_pls_golite062009
  • transporter activity
    		•  0.739583681946393 bayes_pls_golite062009
  • neurexin binding
    		•  0.72940113160582 bayes_pls_golite062009
  • SNARE binding
    		•  0.568661953120771 bayes_pls_golite062009
  • hydrolase activity
    		•  0.501946993060588 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.203141170126034 bayes_pls_golite062009
  • syntaxin binding
    		•  0.0269444342534992 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  7.19063870734022 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  6.90783262781184 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  6.09904629433884 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  5.1950291192201 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.2682543222543 bayes_pls_golite062009
  • binding
    		•  2.62219069341981 bayes_pls_golite062009
  • proline-rich region binding
    		•  2.34621138467934 bayes_pls_golite062009
  • transcription activator activity
    		•  2.28375305944516 bayes_pls_golite062009
  • transcription factor binding
    		•  2.18630749239417 bayes_pls_golite062009
  • transcription cofactor activity
    		•  2.07432061489599 bayes_pls_golite062009
  • transcription coactivator activity
    		•  2.02433252968502 bayes_pls_golite062009
  • ligase activity
    		•  1.93278509588727 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.90194027965368 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.81795522051605 bayes_pls_golite062009
  • protein binding
    		•  1.46903005775608 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.14806422628668 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.14806422628668 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.14806422628668 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.121001087082 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.911388717587011 bayes_pls_golite062009
  • catalytic activity
    		•  0.210712504691113 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K36 specific)
    		•  0.173723075520888 bayes_pls_golite062009
    4
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  7.10194828712949 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  6.82547847405261 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  6.04482261304601 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  5.16615441408338 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.182048695645 bayes_pls_golite062009
  • binding
    		•  2.56070278040924 bayes_pls_golite062009
  • transcription activator activity
    		•  2.05338377709657 bayes_pls_golite062009
  • transcription factor binding
    		•  1.94857953695695 bayes_pls_golite062009
  • proline-rich region binding
    		•  1.9352397980246 bayes_pls_golite062009
  • ligase activity
    		•  1.92115554795958 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.79381302696181 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.7678419433602 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.67777735708173 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.67021314973391 bayes_pls_golite062009
  • protein binding
    		•  1.37024347977003 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.9455445085372 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  0.863094487787088 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  0.863094487787088 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  0.863094487787088 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.782679886083722 bayes_pls_golite062009
  • catalytic activity
    		•  0.231344568578849 bayes_pls_golite062009
    5
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  11.7414753295465 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  11.4871643691645 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  10.4323719338452 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  9.13168684685485 bayes_pls_golite062009
  • ligase activity
    		•  5.34807997732606 bayes_pls_golite062009
  • proline-rich region binding
    		•  2.8338032434061 bayes_pls_golite062009
  • sodium channel inhibitor activity
    		•  2.81182200437095 bayes_pls_golite062009
  • binding
    		•  2.51893471705946 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.32249912875549 bayes_pls_golite062009
  • ion channel inhibitor activity
    		•  2.14402963004533 bayes_pls_golite062009
  • channel inhibitor activity
    		•  2.14402963004533 bayes_pls_golite062009
  • DNA binding
    		•  1.96906809911381 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.82016488092232 bayes_pls_golite062009
  • phosphothreonine binding
    		•  1.40065636224804 bayes_pls_golite062009
  • phosphoserine binding
    		•  1.40065636224804 bayes_pls_golite062009
  • protein binding
    		•  1.39373180706125 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.38110732864799 bayes_pls_golite062009
  • catalytic activity
    		•  1.15152367676155 bayes_pls_golite062009
  • receptor binding
    		•  0.8335024106655 bayes_pls_golite062009
  • transcription factor binding
    		•  0.803487897091874 bayes_pls_golite062009
  • ubiquitin binding
    		•  0.60123113960943 bayes_pls_golite062009
  • ubiquitin-ubiquitin ligase activity
    		•  0.598436219078807 bayes_pls_golite062009
  • small conjugating protein binding
    		•  0.33937847204197 bayes_pls_golite062009
  • sodium channel regulator activity
    		•  0.325435827772996 bayes_pls_golite062009
  • nuclear hormone receptor binding
    		•  0.204781102077891 bayes_pls_golite062009
  • channel regulator activity
    		•  0.072778668515899 bayes_pls_golite062009
    		• 0.051942165438844 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0310258834625421 bayes_pls_golite062009
  • hormone receptor binding
    		•  0.02403431201602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle