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Protein Overview: RS6_RAT

General Information:
Name(s) found: RS6_RAT [Swiss-Prot]
Description(s) found:
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  • gi|8394224|ref|NP_058856.1| ribosomal protein S6 [Rattus norvegicus] [NCBI NR]
  • pir||R3RTS6 ribosomal protein S6, cytosolic [validated] - rat [NCBI NR]
  • gi|51338614|sp|P62755.1|RS6_RAT RecName: Full=40S ribosomal protein S6 [NCBI NR]
  • gi|37194798|gb|AAH58149.1| Ribosomal protein S6 [Rattus norvegicus] [NCBI NR]
  • gi|206747|gb|AAA42079.1| ribosomal protein S6 [NCBI NR]
  • gi|149016890|gb|EDL76012.1| rCG23030, isoform CRA_d [Rattus norvegicus] [NCBI NR]
  • 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):5-123692018 40S ribosomal protein S6 [hmr_yeast5_DM3-1_pombe.fasta]
  • ribosomal protein S6 [HMR_022704-rand.fasta]
  • ribosomal protein S6 [Rattus norvegicus]gi|6677809|ref|NP_033122.1| ribosomal protein S6 [Mus musculus]gi|17158044|ref|NP_001001.2| ribosomal protein S6 [Homo sapiens]gi|48735349|gb|AAH71908.1| Ribosomal protein S6 [Homo sapiens]gi|48735346|gb|AAH7190 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 40S ribosomal protein S6 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • (NM_017160) ribosomal protein S6 [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • 40S ribosomal protein S6 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • ribosomal protein S6 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG23030, isoform CRA_d [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Ribosomal protein S6 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 40S RIBOSOMAL PROTEIN S6 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Rps6 40S ribosomal protein S6 [rat-ipi-250309-contam.fasta]
  • 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 249 amino acids

    Gene Ontology:
    Cellular Component: polysome [UNKNOWN][IEA]
    nucleus [UNKNOWN][IEA]
    perinuclear region of cytoplasm [UNKNOWN][IEA]
    ribonucleoprotein complex [UNKNOWN]
    cytoplasm [UNKNOWN][IEA]
    cytosolic small ribosomal subunit [UNKNOWN][IDA]
    cytosol [UNKNOWN]
    small ribosomal subunit [UNKNOWN]
    nucleolus [UNKNOWN][IEA]
    ribosome [UNKNOWN][TAS]
    intracellular [IEA]
    Biological Process: oogenesis stage [UNKNOWN][IEA]
    T cell differentiation in the thymus [UNKNOWN][IEA]
    mitosis [UNKNOWN][IEA]
    TOR signaling pathway [UNKNOWN][IEA]
    erythrocyte development [UNKNOWN][IEA]
    ribosomal small subunit assembly [IMP]
    rRNA processing [UNKNOWN][IEA]
    placenta development [UNKNOWN][IEA]
    translational elongation [UNKNOWN]
    translation [IEA]
    gastrulation [UNKNOWN][IEA]
    activation-induced cell death of T cells [UNKNOWN][IEA]
    negative regulation of apoptosis [UNKNOWN][IEA]
    G1/S transition of mitotic cell cycle [UNKNOWN][IEA]
    ribosomal small subunit biogenesis [UNKNOWN]
    glucose homeostasis [ISS]
    positive regulation of apoptosis [UNKNOWN][IEA]
    T cell proliferation during immune response [UNKNOWN][IEA]
    G1/S transition checkpoint [UNKNOWN][IEA]
    Molecular Function: protein binding [UNKNOWN][IEA]
    structural constituent of ribosome [IMP][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV RISGGNDKQG  60
   61 FPMKQGVLTH GRVRLLLSKG HSCYRPRRTG ERKRKSVRGC IVDANLSVLN LVIVKKGEKD 120
  121 IPGLTDTTVP RRLGPKRASR IRKLFNLSKE DDVRQYVVRK PLNKEGKKPR TKAPKIQRLV 180
  181 TPRVLQHKRR RIALKKQRTK KNKEEAAEYA KLLAKRMKEA KEKRQEQIAK RRRLSSLRAS 240
  241 TSKSESSQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] Pfam 93.920819 No description for PF01092.10 was found. No confident structure predictions are available.
    2 View Details [129..249] MSA 6.052986 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle