YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_RAT
Organism:	Rattus norvegicus
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_RAT.

Description	E-value	Query Range	Subject Range
gi\|114623995 - gi\|114623995\|ref\|XP_001147795.1\| PREDICTED: similar to Ribosomal protein S6 [Pan troglodytes]	0.0	[1..249]	[82..323]
gi\|26389925 - gi\|26389925\|dbj\|BAC25813.1\| unnamed protein product [Mus musculus]	0.0	[1..248]	[1..248]
RS6_CHICK - 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1	0.0	[1..249]	[1..249]
gi\|50369269, gi\|... - gi\|51226284\|ref\|NP_001003728.1\| ribosomal protein S6 [Danio rerio], gi\|50369269\|gb\|AAH75953.1\| Zgc:9...	0.0	[1..249]	[1..249]
gi\|61369363 - gi\|61369363\|gb\|AAX43323.1\| ribosomal protein S6 [synthetic construct]	0.0	[1..249]	[1..249]
gi\|20381196 - gi\|20381196\|gb\|AAH27620.1\| Ribosomal protein S6 [Homo sapiens]	0.0	[1..249]	[1..249]
RS6_BOVIN - 40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1	0.0	[1..249]	[1..249]
gi\|57101416 - gi\|57101416\|ref\|XP_533921.1\| PREDICTED: similar to 40S ribosomal protein S6 [Canis familiaris]	0.0	[1..249]	[1..249]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV RISGGNDKQG  60
   61 FPMKQGVLTH GRVRLLLSKG HSCYRPRRTG ERKRKSVRGC IVDANLSVLN LVIVKKGEKD 120
  121 IPGLTDTT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.920819
Match:	PF01092.10
Description:	No description for PF01092.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPRRLGPKRA SRIRKLFNLS KEDDVRQYVV RKPLNKEGKK PRTKAPKIQR LVTPRVLQHK  60
   61 RRRIALKKQR TKKNKEEAAE YAKLLAKRMK EAKEKRQEQI AKRRRLSSLR ASTSKSESSQ 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits