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Protein Overview: KACA_RAT

General Information:
Name(s) found: KACA_RAT [Swiss-Prot]
Description(s) found:
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  • gi|69998|pir||K1RTA Ig kappa chain C region (allele a) - rat [NCBI NR]
  • gi|125142|sp|P01836.1|KACA_RAT RecName: Full=Ig kappa chain C region, A allele [NCBI NR]
  • Ig kappa chain C region, A allele OS=Rattus norvegicus PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):None Ig kappa chain C region, A allele [hmr_yeast5_DM3-1_pombe.fasta]
  • Ig kappa chain C region, A allelegi|69998|pir||K1RTA Ig kappa chain C region (allele a) - rat [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Ig kappa chain C region, A allele [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Ig kappa chain C region, A allele [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 IG KAPPA CHAIN C REGION, A ALLELE [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=LOC500183 Ig kappa chain C region, A allele [rat-ipi-250309-contam.fasta]
  • Ig kappa chain C region, A allele OS=Rattus norvegicus [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 106 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: antigen binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADAAPTVSIF PPSMEQLTSG GATVVCFVNN FYPRDISVKW KIDGSEQRDG VLDSVTDQDS  60
   61 KDSTYSMSST LSLTKVEYER HNLYTCEVVH KTSSSPVVKS FNRNEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] PSI-BLAST 31.221849 Immunoglobulin light chain kappa variable domain, VL-kappa; Immunoglobulin light chain kappa constant domain, CL-kappa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • antigen binding
    		•  6.15874156332332 bayes_pls_golite062009
  • peptide antigen binding
    		•  3.64034637674979 bayes_pls_golite062009
  • binding
    		•  1.98262954718581 bayes_pls_golite062009
  • receptor activity
    		•  1.9202781107236 bayes_pls_golite062009
  • receptor binding
    		•  1.67130413402976 bayes_pls_golite062009
  • IgG binding
    		•  1.6222936767122 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.50492718932189 bayes_pls_golite062009
  • signal transducer activity
    		•  1.11174153927545 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.11174153927545 bayes_pls_golite062009
  • immunoglobulin receptor activity
    		•  1.06402558628866 bayes_pls_golite062009
  • protein binding
    		•  0.925738463571838 bayes_pls_golite062009
  • immunoglobulin binding
    		•  0.48272957113121 bayes_pls_golite062009
  • cytokine binding
    		•  0.372406716355349 bayes_pls_golite062009
  • MHC class II receptor activity
    		•  0.251167772391909 bayes_pls_golite062009
  • growth factor binding
    		•  0.0566162403218091 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle