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Protein Overview: SZ05_MOUSE, CXCL...

General Information:
Name(s) found: SZ05_MOUSE [Swiss-Prot]
SCYB5_MOUSE [Swiss-Prot]
CXCL5_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|950159|gb|AAC52238.1| LIX precursor [Mus musculus] [NCBI NR]
  • gi|6677887|ref|NP_033167.1| chemokine (C-X-C motif) ligand 5 [Mus musculus] [NCBI NR]
  • gi|19353900|gb|AAH24392.1| Cxcl5 protein [Mus musculus] [NCBI NR]
  • gi|1708848|sp|P50228.1|CXCL5_MOUSE RecName: Full=C-X-C motif chemokine 5; AltName: Full=Small-inducible cytokine B5; AltName: Full=Cytokine LIX; Contains: RecName: Full=GCP-2(1-78); Contains: RecName: Full=GCP-2(9-78); Flags: Precursor [NCBI NR]
  • gi|149254192|ref|XP_001472749.1| PREDICTED: similar to LPS-induced CXC chemokine [Mus musculus] [NCBI NR]
  • gi|148673362|gb|EDL05309.1| chemokine (C-X-C motif) ligand 5 [Mus musculus] [NCBI NR]
  • pir||A57325 C-X-C chemokine LIX - mouse [NCBI NR]
  • gi|13560693|gb|AAK30161.1|AF349465_1 LIX protein [Mus musculus] [NCBI NR]
  • (P50228) Small inducible cytokine B5 precursor (CXCL5) (Cytokine LIX) [Contains: GCP-2(1-78); GCP-2(9-78)] [Swiss-Prot]
  • Small-inducible cytokine B5 precursor - Mus musculus (Mouse) [Swiss-Prot]
  • C-X-C motif chemokine 5 OS=Mus musculus GN=Cxcl5 PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):5-90061224 Small inducible cytokine B5 precursor [hmr_yeast5_DM3-1_pombe.fasta]
  • chemokine (C-X-C motif) ligand 5; small inducible cytokine B subfamily, member 5; small inducible cytokine subfamily B, member 15; granulocyte chemotactic protein-2 [HMR_022704-rand.fasta]
  • Small inducible cytokine B5 precursor [ipi.MOUSE.v3.06.fasta]
  • chemokine (C-X-C motif) ligand 5 [Mus musculus]gi|19353900|gb|AAH24392.1| Chemokine (C-X-C motif) ligand 5 [Mus musculus]gi|13560693|gb|AAK30161.1| LIX protein [Mus musculus]gi|950159|gb|AAC52238.1| LIX precursorgi|1363102|pir||A57325 C-X-C chemokine [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Small inducible cytokine B5 precursor [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_009141) small inducible cytokine B subfamily, member 5; small inducible cytokine subfamily B, member 15; granulocyte chemotactic protein-2 [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • chemokine (C-X-C motif) ligand 5 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • C-X-C motif chemokine 5 precursor (Small-inducible cytokine B5) (Cytokine LIX) [Contains: GCP-2(1-78); GCP-2(9-78)] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PREDICTED: similar to LPS-induced CXC chemokine [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Cxcl5 protein [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • LIX precursor [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • LIX protein [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SMALL INDUCIBLE CYTOKINE B5 PRECURSOR [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Cxcl5;LOC100044702 C-X-C motif chemokine 5 [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=LOC100044702;Cxcl5 C-X-C motif chemokine 5 precursor [ipi.MOUSE_jw_12may08.contam.fasta]
  • Small inducible cytokine B5 precursor (CXCL5) (Cytokine LIX) [Contains: GCP-2(1-78); GCP-2(9-78)] [nr-271106-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Cxcl5 Small inducible cytokine B5 precursor [zeeyong.fasta]
  • IPI:IPI00116264.1|SWISS-PROT:P50228|TREMBL:Q790R4|REFSEQ:XP_001472749 Tax_Id=10090 Gene_Symbol=LOC100044702;Cxcl5 C-X-C motif chemokine 5 [ipi.MOUSE.fasta.20090209]
  • C-X-C motif chemokine 5 OS=Mus musculus GN=Cxcl5 [011711_HMR.fasta]
  • Tax_Id=10090 Gene_Symbol=Cxcl5 C-X-C motif chemokine 5 [EBI-IPI_mouse_2_08-18-2011_reversed.fasta]
  • tr|Q790R4|Q790R4_MOUSE Chemokine (C-X-C motif) ligand 5 OS=Mus musculus GN=Cxcl5 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • Chemokine (C-X-C motif) ligand 5 OS=Mus musculus GN=Cxcl5 PE=2 SV=1 [mouse-uniprot-290313-contam.fasta]
  • Chemokine (C-X-C motif) ligand 5 OS=Mus musculus GN=Cxcl5 PE=3 SV=1 [mouse-uniprot-oct2014-contam.fasta]
    • Organism: Mus musculus
    Length: 132 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IEA]
    extracellular region [IEA]
    Biological Process: chemotaxis [IEA]
    inflammatory response [UNKNOWN]
    immune response [IEA]
    cytokine production [UNKNOWN]
    Molecular Function: cytokine activity [IEA]
    chemokine activity [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQLRSSAH IPSGSSSPFM RMAPLAFLLL FTLPQHLAEA APSSVIAATE LRCVCLTVTP  60
   61 KINPKLIANL EVIPAGPQCP TVEVIAKLKN QKEVCLDPEA PVIKKIIQKI LGSDKKKAKR 120
  121 NALAVERTAS VQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 16.221849 CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.3900020421144 bayes_pls_golite062009
  • protein binding
    		•  1.08080878723934 bayes_pls_golite062009
  • receptor binding
    		•  0.76867241822245 bayes_pls_golite062009
  • cytokine activity
    		•  0.53309192942479 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  0.32020721127886 bayes_pls_golite062009
  • chemokine activity
    		•  0.26786878228995 bayes_pls_golite062009
  • chemokine receptor binding
    		•  0.26786878228995 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle