YRC Public Data Repository - Protein Structure Prediction

Protein:	SZ05_MOUSE, CXCL...
Organism:	Mus musculus
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SZ05_MOUSE, CXCL....

Description	E-value	Query Range	Subject Range
CXCL5_MOUSE - C-X-C motif chemokine 5 OS=Mus musculus GN=Cxcl5 PE=1 SV=2	121.0	[0..1]	[132..1]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	111.0	[0..15]	[118..4]
CCL2_RABIT - C-C motif chemokine 2 OS=Oryctolagus cuniculus GN=CCL2 PE=2 SV=1	105.0	[0..22]	[131..1]
gi\|21070221, gi\|... - gi\|21070221\|gb\|AAM34214.1\|AF506972_1 mcp-2 [Equus caballus], gi\|126352332\|ref\|NP_001075333.1\| mcp-2 ...	104.0	[0..22]	[119..1]
gi\|631586 - gi\|631586\|pir\|\|JC2336 monocyte chemoattractant protein-1 - bovine CCL2_BOVIN - C-C motif chemokine 2 OS=Bos taurus GN=CCL2 PE=3 SV=1	102.0	[0..22]	[119..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	101.0	[0..22]	[111..1]
CCL13 - chemokine (C-C motif) ligand 13 gi\|60654807, gi\|... - gi\|60654809\|gb\|AAX31969.1\| chemokine (C-C motif) ligand 13 [synthetic construct], gi\|60654807\|gb\|AAX...	101.0	[0..22]	[119..1]
CCL7_RAT - C-C motif chemokine 7 OS=Rattus norvegicus GN=Ccl7 PE=3 SV=1	101.0	[0..22]	[119..1]
gi\|114671857 - gi\|114671857\|ref\|XP_001172226.1\| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor ...	100.0	[0..25]	[111..45]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQLRSSAH IPSGSSSPFM RMAPLAFLLL FTLPQHLAEA APSSVIAATE LRCVCLTVTP  60
   61 KINPKLIANL EVIPAGPQCP TVEVIAKLKN QKEVCLDPEA PVIKKIIQKI LGSDKKKAKR 120
  121 NALAVERTAS VQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.221849
Match:	1f9pA
Description:	CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3900020421144	bayes_pls_golite062009
protein binding	1.08080878723934	bayes_pls_golite062009
receptor binding	0.76867241822245	bayes_pls_golite062009
cytokine activity	0.53309192942479	bayes_pls_golite062009
G-protein-coupled receptor binding	0.32020721127886	bayes_pls_golite062009
chemokine activity	0.26786878228995	bayes_pls_golite062009
chemokine receptor binding	0.26786878228995	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: