Protein Overview: YGDC_SCHPO

General Information:
Name(s) found:	YGDC_SCHPO [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|19111919\|ref\|NP_595127.1\| transcriptional regulator [Schizosaccharomyces pombe 972h-] [NCBI NR] Uncharacterized transcriptional regulatory protein C1773.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1773.12 PE=3 SV=1 [Swiss-Prot]
Organism:	Schizosaccharomyces pombe 972h-
Length:	594 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPIKKISTA CDLCRQRKLR CNGELPKCQN CVVYSETCKY NKRKRVKKPN VDKDDPHIVV  60
   61 GQPPVKKSTA GITREYTEMI ELRNHIITLS KRSVNMESRI DDMLNLLNYD LSEKRETSNE 120
  121 IPSLVQQIQN CGFLIDEKMR RYPGIFQIHP KDYTMNDLFP QSFPTWISVY RNVPEKAWAN 180
  181 RCVEWYFRYI NSCWPLFDLE NFMDLFDNFY SDKEKTKGAW VVSFYAIMAL AVSRSKRKDK 240
  241 EKISKSLFST SWFLVQKPGF FLTARLDKIQ ALTIMIQFCA HLSLYNLCKV LCGQMCLMVK 300
  301 DLDLHKEATN PNVDIEVDEL NRRVFWTCYI FETTTSLIFG TPPELGDLEI DCQLPSMDVL 360
  361 PRFTESSQGG IVFCSEIQLT IIKNEIRKKI YKCLASASEE VYKEAVLSIR GKLIVWERNL 420
  421 PDELKQYYDV IKLNGTIPKN VDFENQHIFT ACVEIYLSYC ITQLYFYDPL TNYETCLEIA 480
  481 RKAADAIRSY FMVIEPIFKK ICYLWLFLYC PFTPFQILFS NILKMEKGTS DEKIEDLDRM 540
  541 YSLYRFFVEM KEINGEFADK LSRVALDCID AAEHYLELKS SVGSNIFELE SLLV

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
transcription regulator activity	4.56444258780502	bayes_pls_golite062009
DNA binding	4.26146437716972	bayes_pls_golite062009
nucleic acid binding	4.17369933547911	bayes_pls_golite062009
transcription factor activity	3.049435548132	bayes_pls_golite062009
RNA polymerase II transcription factor activity	2.93914501897006	bayes_pls_golite062009
binding	2.91929847152301	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	2.44382866473054	bayes_pls_golite062009
sequence-specific DNA binding	1.87955444697212	bayes_pls_golite062009
transcription activator activity	0.915626626047549	bayes_pls_golite062009

No functions predicted.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.81

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..140]	PSI-BLAST	7.0	PPR1
2	View Details	[141..235]	deduced	N/A	Confident ab initio structure predictions are available.
3	View Details	[236..365]	Pfam	30.376751	No description for PF04082.9 was found. Confident ab initio structure predictions are available.
4	View Details	[366..467]	deduced	N/A	No confident structure predictions are available.
5	View Details	[468..594]	MSA	2.358997	View MSA. No confident structure predictions are available.

Protein Overview: YGDC_SCHPO

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: