| Protein: | YGDC_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 594 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGDC_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
254.0 | [0..3] | [591..63] |
|
|
253.0 | [0..1] | [593..1] |
|
|
234.0 | [0..3] | [574..63] |
|
|
232.0 | [0..1] | [570..1] |
|
|
226.0 | [0..3] | [579..61] |
|
|
218.0 | [0..3] | [579..61] |
|
|
217.0 | [0..2] | [568..26] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MVPIKKISTA CDLCRQRKLR CNGELPKCQN CVVYSETCKY NKRKRVKKPN VDKDDPHIVV 60
61 GQPPVKKSTA GITREYTEMI ELRNHIITLS KRSVNMESRI DDMLNLLNYD LSEKRETSNE 120
121 IPSLVQQIQN CGFLIDEKMR
|
| Detection Method: |  |
| Confidence: | 7.0 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [141-235] |
1 11 21 31 41 51
| | | | | |
1 RYPGIFQIHP KDYTMNDLFP QSFPTWISVY RNVPEKAWAN RCVEWYFRYI NSCWPLFDLE 60
61 NFMDLFDNFY SDKEKTKGAW VVSFYAIMAL AVSRS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.624 | 0.930 | nuclear chromosome | a.4.1 | Homeodomain-like |
|
Region A: Residues: [236-365] |
1 11 21 31 41 51
| | | | | |
1 KRKDKEKISK SLFSTSWFLV QKPGFFLTAR LDKIQALTIM IQFCAHLSLY NLCKVLCGQM 60
61 CLMVKDLDLH KEATNPNVDI EVDELNRRVF WTCYIFETTT SLIFGTPPEL GDLEIDCQLP 120
121 SMDVLPRFTE
|
| Detection Method: | |
| Confidence: | 30.376751 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.923 | 0.131 | zinc ion binding | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [366-467] |
1 11 21 31 41 51
| | | | | |
1 SSQGGIVFCS EIQLTIIKNE IRKKIYKCLA SASEEVYKEA VLSIRGKLIV WERNLPDELK 60
61 QYYDVIKLNG TIPKNVDFEN QHIFTACVEI YLSYCITQLY FY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [468-594] |
1 11 21 31 41 51
| | | | | |
1 DPLTNYETCL EIARKAADAI RSYFMVIEPI FKKICYLWLF LYCPFTPFQI LFSNILKMEK 60
61 GTSDEKIEDL DRMYSLYRFF VEMKEINGEF ADKLSRVALD CIDAAEHYLE LKSSVGSNIF 120
121 ELESLLV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
