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Protein Overview: YF54_SCHPO

General Information:
Name(s) found: YF54_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Uncharacterized transcriptional regulatory protein C3C7.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3C7.04 PE=3 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 783 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEFSPENT AVLFEAMKQE QHNRRRRVPM ERRRRVVLAC FNCKARKVRC DGANPCKACA  60
   61 SNNLECTYPV KDEKEMDYSK DYFIDLSKRY KCLEYIVERL CSTKVSTYTT PSLIEVCNRI 120
  121 SNQKSLLSSD VFSLNSESTN SQRDVDTLTQ GALVCSQIQQ DPTVVAEDTN NGINADASDQ 180
  181 SVDEIMKLIG KIKVDSNGES RYIGASAGEA FVDSVQSELL VDPSFSELSA YSHTHHSYPP 240
  241 NEHDVNAVQK ALSLLPPPEV SDFLIKSFYG HVQANFFFFH ETLLRYRLNL IMSFQNPSVD 300
  301 PGFLCLLMMI FALGSMFAHM EIRSASNPFD NPGKQFFDTA RLLLPQVIQQ CKPSLVQASI 360
  361 LMGLYLQSTL SQKSSYTYFG LSLSAAVANG LHRSCENPNI DPKTKELRNR LWWSVYTMDR 420
  421 LISIATGRPL SIADSECDAA LPTVVPELEI EGSASNVHNI ISMSKIAKIM GKTMEQLYGT 480
  481 VNYKKNPINI IESLRADLEE WKRSLPPFQI LENLDAEDPL FRANVHLHMT YDQAIIIMSR 540
  541 PVLLHKMKNA KNSPRVDRIN EDCILAARHL ISLVHLLQNH SQLSCYSFFD YNYTFSSALV 600
  601 VLLHCVTEPC EEDDIAMQYA YSALDYMAEG NEAAKNCARV IRLFDAHLKG ARSDGNGNTS 660
  661 QSGFMAWQRW IAEVSAKDEP EKLMSPYNKS IGGGRNSNSL TPNANLGADV SFFPTDDTSF 720
  721 LLDHSKLDDD LEKFASTLDP IKTTPDLAND SSLLNWANTD QGMDIEGSWL GNMHPTWLDY 780
  781 VCP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 7.0 PUT3
    2 View Details [99..243] FFAS03 1.42 PPR1
    3 View Details [244..350] deduced N/A No confident structure predictions are available.
    4 View Details [351..441] Pfam 34.080922 No description for PF04082.9 was found. Confident ab initio structure predictions are available.
    5 View Details [442..651] deduced N/A No confident structure predictions are available.
    6 View Details [652..783] MSA 2.073995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.98081393153291 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.93914501897006 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  2.44382866473054 bayes_pls_golite062009
  • transcription activator activity
    		•  2.24483536326713 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.34861813464065 bayes_pls_golite062009
  • DNA binding
    		•  4.03985756894684 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97978190843512 bayes_pls_golite062009
  • transcription factor activity
    		•  2.87348461329489 bayes_pls_golite062009
  • binding
    		•  2.82809978070212 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.77469997789536 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.70904317608141 bayes_pls_golite062009
  • transcription activator activity
    		•  2.1512787242583 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  2.08956709478484 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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