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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: YF54_SCHPO
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.16
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEFSPENT AVLFEAMKQE QHNRRRRVPM ERRRRVVLAC FNCKARKVRC DGANPCKACA  60
   61 SNNLECTYPV KDEKEMDYSK DYFIDLSKRY KCLEYIVERL CSTKVSTYTT PSLIEVCNRI 120
  121 SNQKSLLSSD VFSLNSESTN SQRDVDTLTQ GALVCSQIQQ DPTVVAEDTN NGINADASDQ 180
  181 SVDEIMKLIG KIKVDSNGES RYIGASAGEA FVDSVQSELL VDPSFSELSA YSHTHHSYPP 240
  241 NEHDVNAVQK ALSLLPPPEV SDFLIKSFYG HVQANFFFFH ETLLRYRLNL IMSFQNPSVD 300
  301 PGFLCLLMMI FALGSMFAHM EIRSASNPFD NPGKQFFDTA RLLLPQVIQQ CKPSLVQASI 360
  361 LMGLYLQSTL SQKSSYTYFG LSLSAAVANG LHRSCENPNI DPKTKELRNR LWWSVYTMDR 420
  421 LISIATGRPL SIADSECDAA LPTVVPELEI EGSASNVHNI ISMSKIAKIM GKTMEQLYGT 480
  481 VNYKKNPINI IESLRADLEE WKRSLPPFQI LENLDAEDPL FRANVHLHMT YDQAIIIMSR 540
  541 PVLLHKMKNA KNSPRVDRIN EDCILAARHL ISLVHLLQNH SQLSCYSFFD YNYTFSSALV 600
  601 VLLHCVTEPC EEDDIAMQYA YSALDYMAEG NEAAKNCARV IRLFDAHLKG ARSDGNGNTS 660
  661 QSGFMAWQRW IAEVSAKDEP EKLMSPYNKS IGGGRNSNSL TPNANLGADV SFFPTDDTSF 720
  721 LLDHSKLDDD LEKFASTLDP IKTTPDLAND SSLLNWANTD QGMDIEGSWL GNMHPTWLDY 780
  781 VCP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle