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Protein Overview: RPB4_SCHPO

General Information:
Name(s) found: RPB4_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • DNA-directed RNA polymerase II subunit rpb4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb4 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 135 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRAIFEEDA AQLKLGPEFE NEDMLTVSEA KILIETVLAQ RARETNGEIP MTDVMKKTVA  60
   61 YFNVFARFKT AEATYACERI LGNRFHKFER AQLGTLCCED AEEARTLIPS LANKIDDQNL 120
  121 QGILDELSTL RKFQD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] PSI-BLAST 41.045757 Subunits Rpb4 and Rpb7 of human RNA polymerase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  7.79299049190673 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  7.79299049190673 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  5.88847066010291 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  5.64167948892069 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.61328590649468 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  5.24793615322916 bayes_pls_golite062009
  • acetyltransferase activity
    		•  4.75295723552983 bayes_pls_golite062009
  • transferase activity
    		•  4.57125212908013 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.94406317857222 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.89451113558527 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.66048758356007 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.4721848902664 bayes_pls_golite062009
  • binding
    		•  1.9212205923594 bayes_pls_golite062009
  • catalytic activity
    		•  1.17990683373825 bayes_pls_golite062009
  • protein binding
    		•  0.497114544861103 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.430689791429257 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35631508447468 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.288686121121112 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.19197002346626 bayes_pls_golite062009
  • ribonuclease III activity
    		•  0.0092766021353235 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle