YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|19075967

General Information:
Name(s) found: gi|19075967 [NCBI NR]
Description(s) found:
  • gi|19075967|ref|NP_588467.1| hypothetical protein SPCC1620.09c [Schizosaccharomyces pombe 972h-] [NCBI NR]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 490 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQETKVFE NVKQENPDEK KPKVEEPDSQ NNASTQSQQK FLDFQLSWCP ESERKTTKYH  60
   61 LLKFHSNKAI DPSKSFVPPI KMQRRDPNAP SSSNGEQNAE QGSSSNVNIA SIAPYGGAQN 120
  121 MKQNAFKRKT RQVVKVDPQA RRLQEEELSP WIMEDFEGKN TWVSTMEGGQ SSAYVLFMFS 180
  181 ENGFKVIPTD RFYRFNQRNN FQTLSIDEAE AKMNKKTPIP RWFMKKESEE NLAEAGSASP 240
  241 MYKLKTVPNA RPVTGPRASG SDDELDYDEE FADDEEAPIM EGNEEDNKKL KDKIKKEMLT 300
  301 ANLFGEADQD VDLEEENDRQ MSREGKKLQR YLKLLEKNLA YESDEEDEDP YASSHDASSE 360
  361 EEVLQEEEEL QKREEKLKSR FSANASKTNT PRPLERTPSS VSPVKASSQL QSPNTSIQIR 420
  421 PQEQLINKPG YIILRLSSEK LSRFANDFPR MVPSMGSTET SVGDQVEVVG DTTNVPIDGM 480
  481 LKFYIYQKIY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..221] PSI-BLAST 37.0 TFIIF alpha subunit, Rap74
    2 View Details [222..412] MSA 4.115995 View MSA. No confident structure predictions are available.
    3 View Details [413..490] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  10.2797850053222 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  6.22439849848084 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  4.06672086326535 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.89911747857156 bayes_pls_golite062009
  • binding
    		•  2.6963272883422 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.30173573105398 bayes_pls_golite062009
  • protein binding
    		•  1.06175937412568 bayes_pls_golite062009
  • transcription activator activity
    		•  0.800371882273381 bayes_pls_golite062009
  • transcription factor binding
    		•  0.677361513203971 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.43974291826617 bayes_pls_golite062009
  • catalytic activity
    		•  0.304516551414824 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle