| Protein: | gi|19075967 |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 490 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19075967.
| Description | E-value | Query Range |
Subject Range |
|
|
175.0 | [0..15] | [393..5] |
|
|
174.0 | [0..29] | [253..2] |
|
|
169.0 | [0..34] | [383..54] |
|
|
163.0 | [0..25] | [358..80] |
|
|
152.0 | [0..29] | [221..1] |
|
|
152.0 | [0..38] | [385..35] |
|
|
152.0 | [0..20] | [415..62] |
|
|
152.0 | [0..46] | [417..18] |
|
Region A: Residues: [1-221] |
1 11 21 31 41 51
| | | | | |
1 MDSQETKVFE NVKQENPDEK KPKVEEPDSQ NNASTQSQQK FLDFQLSWCP ESERKTTKYH 60
61 LLKFHSNKAI DPSKSFVPPI KMQRRDPNAP SSSNGEQNAE QGSSSNVNIA SIAPYGGAQN 120
121 MKQNAFKRKT RQVVKVDPQA RRLQEEELSP WIMEDFEGKN TWVSTMEGGQ SSAYVLFMFS 180
181 ENGFKVIPTD RFYRFNQRNN FQTLSIDEAE AKMNKKTPIP R
|
| Detection Method: |  |
| Confidence: | 37.0 |
| Match: | 1f3uB |
| Description: | TFIIF alpha subunit, Rap74 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 10.2797850053222 | bayes_pls_golite062009 |
| transcription initiation factor activity | 6.22439849848084 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 4.06672086326535 | bayes_pls_golite062009 |
| transcription regulator activity | 3.89911747857156 | bayes_pls_golite062009 |
| binding | 2.6963272883422 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.30173573105398 | bayes_pls_golite062009 |
| protein binding | 1.06175937412568 | bayes_pls_golite062009 |
| transcription activator activity | 0.800371882273381 | bayes_pls_golite062009 |
| transcription factor binding | 0.677361513203971 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.43974291826617 | bayes_pls_golite062009 |
| catalytic activity | 0.304516551414824 | bayes_pls_golite062009 |
|
Region A: Residues: [222-412] |
1 11 21 31 41 51
| | | | | |
1 WFMKKESEEN LAEAGSASPM YKLKTVPNAR PVTGPRASGS DDELDYDEEF ADDEEAPIME 60
61 GNEEDNKKLK DKIKKEMLTA NLFGEADQDV DLEEENDRQM SREGKKLQRY LKLLEKNLAY 120
121 ESDEEDEDPY ASSHDASSEE EVLQEEEELQ KREEKLKSRF SANASKTNTP RPLERTPSSV 180
181 SPVKASSQLQ S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [413-490] |
1 11 21 31 41 51
| | | | | |
1 PNTSIQIRPQ EQLINKPGYI ILRLSSEKLS RFANDFPRMV PSMGSTETSV GDQVEVVGDT 60
61 TNVPIDGMLK FYIYQKIY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
