YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|109128441

General Information:
Name(s) found: gi|109128441 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|109128441|ref|XP_001114318.1| PREDICTED: seven in absentia homolog 1 isoform 2 [Macaca mulatta] [NCBI NR]
  • PREDICTED: seven in absentia homolog 1 isoform 2 [Macaca mulatta] [NCBI-RefSeq_multi-organisms_na_06-01-2008_reversed.fasta]
    • Organism: Macaca mulatta
    Length: 282 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQTATALP TGTSKCPPSQ RVPALTGTTA SNNDLASLFE CPVCFDYVLP PILQCQSGHL  60
   61 VCSNCRPKLT CCPTCRGPLG SIRNLAMEKV ANSVLFPCKY ASSGCEITLP HTEKADHEEL 120
  121 CEFRPYSCPC PGASCKWQGS LDAVMPHLMH QHKSITTLQG EDIVFLATDI NLPGAVDWVM 180
  181 MQSCFGFHFM LVLEKQEKYD GHQQFFAIVQ LIGTRKQAEN FAYRLELNGH RRRLTWEATP 240
  241 RSIHEGIATA IMNSDCLVFD TSIAQLFAEN GNLGINVTIS MC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] PSI-BLAST 10.69897 RAG1 DIMERIZATION DOMAIN
    2 View Details [78..282] PSI-BLAST 57.522879 Crystal structure of Siah1 SBD bound to the peptide EKPAAVVAPITTG from SIP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  5.32809533104435 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  5.17943669371679 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  4.2482314105959 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  3.07217714843839 bayes_pls_golite062009
  • binding
    		•  2.15929427993458 bayes_pls_golite062009
  • protein binding
    		•  1.49775478023418 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  0.786612602432575 bayes_pls_golite062009
  • ligase activity
    		•  0.63517530468004 bayes_pls_golite062009
  • peptidase activity
    		•  0.629020501929934 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.616462655649223 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  0.549461161056205 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.181063140818134 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  0.159023519781458 bayes_pls_golite062009
  • hydrolase activity
    		•  0.156835837705934 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.125491277540945 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle