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Protein Overview: gi|89102912, gi|...

General Information:
Name(s) found: gi|89102912 [NCBI NR]
gi|165936380 [NCBI NR]
gi|165915496 [NCBI NR]
Description(s) found:
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  • gi|89102912|ref|ZP_01175514.1| COG0557: Exoribonuclease R [Yersinia pestis biovar Orientalis str. IP275] [NCBI NR]
  • gi|165936380|ref|ZP_02224948.1| ribonuclease R [Yersinia pestis biovar Orientalis str. IP275] [NCBI NR]
  • gi|165915496|gb|EDR34105.1| ribonuclease R [Yersinia pestis biovar Orientalis str. IP275] [NCBI NR]
  • COG0557: Exoribonuclease R [Yersinia pestis biovar Orientalis str. IP275] [nr-271106-contam.fasta]
    • Organism: Yersinia pestis biovar Orientalis str. IP275
    Length: 844 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDPFLERE AEKYESPIPS REFILAHLAK RETPASREEL ANELNLTGEE PLEALRRRLR  60
   61 AMERDGQLVF TRRQCYALPE RLDLLRGTVI GHRDGYGFLR VEGSKDDLYL SAEQMKMAIH 120
  121 GDVVLAQVVG ADRKGRREAR IVRVLVPKTS QIVGRYFTDA GTGFVVPDDS RLSFDILIPA 180
  181 EATCGARMGF VVVVELTQRP TRRTKAVGKI VEVLGENMGT SMAVDIALRT HEIPHTWPPQ 240
  241 VEKQVADLKE QVPEEAKKGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA 300
  301 DVSYYVRPQT ALDDEARSRG NSVYFPSQVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTIS 360
  361 SQGKLSSYKF YEAVMSSHAR LTYTKVWRII DGEESLREQY KPLVPHLEEL HAMYKVLDQA 420
  421 RAERGGIAFE TEEAKFIFNA ERRIERIEPT VRNDAHKLIE ECMILANIAA ARFVEKHEEP 480
  481 ALFRVHDRPS DDHIVALRSV LNELGLTLGG GLKPQPKDYS VLMDEISDRP DHEMLQTMLL 540
  541 RSMKQAVYDP ENRGHFGLAL ASYGHFTSPI RRYPDLAMHR AIKYQLAKEH GNLKDRWTPT 600
  601 GGWHSDFEDM LQLGQHCSMT ERRADEATRD VADWLKCDFM LDQVGNVFTG IIASVTGFGF 660
  661 FVRLDDLFID GLVHVSSLDN DYYRYDNIGQ RLIGESSGVV YRLGDTVEIR VDAVHMDERK 720
  721 IDFALVSSTR KPRGEGKTAR DKAKNNGQRT LRSNSAGRGS SSGSSRRDGA PTAGGQKRPR 780
  781 RAKKPVNFEP DSAFRPDAAA AKPDDKALAE KKAKAKAKRA SAKTKKIAAA TKAKRAKKKT 840
  841 TSDQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..735] PSI-BLAST 138.0 No description for 2id0A was found.
    2 View Details [736..844] PSI-BLAST 8.522879 Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.50222432647158 bayes_pls_golite062009
  • binding
    		•  2.45645422079711 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.29464134578835 bayes_pls_golite062009
  • DNA binding
    		•  2.01509187496805 bayes_pls_golite062009
  • RNA binding
    		•  0.764074810825563 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.645338044440112 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.645324285187609 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.645324285187609 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.625278911312822 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.593594938681299 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.579049615800331 bayes_pls_golite062009
  • hydrolase activity
    		•  0.184672913742179 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.00505175337890207 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle