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Protein Overview: gi|108862276

General Information:
Name(s) found: gi|108862276 [NCBI NR]
Description(s) found:
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  • gi|108862276|gb|ABA96019.2| exonuclease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • exonuclease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 607 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYLHKSPFH HRGNTNISPS TTLSRSWVRP PQIRGLPCII LPPPRQSPRS AADAHMAAPS  60
   61 GSGEAAPASS TYYDVYGPDA KPDVVFKEAT SNSTLNLQDV QGLVTWVIGD GMLPSWVFVK 120
  121 NKPLIPKVVL LYVPGLDAAL YMSQSRHLSS LKEFCGNPKP VLASSCIPDE RHTIDALLTC 180
  181 RVKRKRALKT TDQSHESDGQ EKLSSLDDLK DIPFPIKYYT LSEKDLEDNG YNFSLEGFVP 240
  241 TVSAPPGSSP YAILALDCEM CVTAAGFELT RVTLVDIKGE VVLDKLVKPA NPITDYNTRF 300
  301 SGITAEMLAD VTTTLQEIQE EFVGLVHKET VLVGHSLEND LMALRISHDL IIDTAVLYKH 360
  361 NRGHRFKIAL RVLAKKFLNR EIQNTGSGHD SVEDAKAALE LALLKIKYGP DFGSPPSTSR 420
  421 RKLASILHES GKKCSLIDDA SVLERYSDAS CNSIAVFSDD DALSRSMKEV KNDKVSFVWT 480
  481 QFSKLISYLR TRAQDPDKVK SCVAEAIALQ TCDRKTAQKR KKHQTCPELK EILIGLDKKI 540
  541 RKLYSILPDN AMLIICSGHG DTPLVQRLRK MLKQEEETVE SRESIVKALE DIQAQAEVAL 600
  601 CFCCVKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] deduced N/A No confident structure predictions are available.
    2 View Details [79..246] MSA 1.451989 View MSA. No confident structure predictions are available.
    3 View Details [247..427] PSI-BLAST 26.69897 human ISG20
    4 View Details [428..515] deduced N/A No confident structure predictions are available.
    5 View Details [516..607] MSA 27.375995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • nuclease activity
    		•  2.65398446409354 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.17677493546761 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.74431545836806 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.70600098208524 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.65911933935463 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.59628511603826 bayes_pls_golite062009
  • exonuclease activity
    		•  1.4327316829508 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  1.42069917818896 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.19753926150484 bayes_pls_golite062009
    		• 1.18236432793831 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.10433412699603 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.04079362397031 bayes_pls_golite062009
  • endonuclease activity
    		•  0.991569665925888 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.86862629020506 bayes_pls_golite062009
  • DNA binding
    		•  0.860359347662869 bayes_pls_golite062009
  • hydrolase activity
    		•  0.768258293320302 bayes_pls_golite062009
  • binding
    		•  0.762139256580538 bayes_pls_golite062009
  • RNA binding
    		•  0.750194803368593 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.389326716045122 bayes_pls_golite062009
  • transcription factor activity
    		•  0.332903382446869 bayes_pls_golite062009
  • endoribonuclease activity
    		•  0.016619833072142 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle