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Protein Overview: gi|222624450, gi...

General Information:
Name(s) found: gi|222624450 [NCBI NR]
gi|215694040 [NCBI NR]
gi|115451543 [NCBI NR]
gi|113547843 [NCBI NR]
gi|108706835 [NCBI NR]
Description(s) found:
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  • gi|222624450|gb|EEE58582.1| hypothetical protein OsJ_09909 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215694040|dbj|BAG89239.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115451543|ref|NP_001049372.1| Os03g0214600 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113547843|dbj|BAF11286.1| Os03g0214600 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108706835|gb|ABF94630.1| PCI domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • Os03g0214600 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • PCI domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 385 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQFVESQR EARPELADPY ADLADLYQRK LWHQLTLKLD HFLQLPAAQT GDTLIQLYNN  60
   61 FITDFETKIN LLKLAHFAVI ASRQYPDKDA AISFLEGVIT KLRETKDLRI NEPILYVKMQ 120
  121 IAAINLEKGN QKECKKLLDE GKSTLDSMTD VDPTVHASLY WISSQYHKAR QEFAEFYKNA 180
  181 LLYLAYTTVE SLSESFKLDL AFDLSLAALL GDNIYNFGEL LAHPIINSLI GTKVEWVYHM 240
  241 LQAFNTGNLA LYQELCRVHN AALSAQPALV QNERKLLEKI NILCLMEIIF SRASEDRTIP 300
  301 LSVIAERTKL SISDVEYLLM KSLSVHLIEG IIDEVDSTVH VSWVQPRVLG IPQVKALRER 360
  361 LDAWVGKVHT TLLSVEAETP DLVAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] MSA 3.352997 View MSA. No confident structure predictions are available.
    2 View Details [104..267] MSA 4.439995 View MSA. No confident structure predictions are available.
    3 View Details [268..385] PSI-BLAST 9.39794 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.77201910025409 bayes_pls_golite062009
  • binding
    		•  3.52874320222492 bayes_pls_golite062009
  • DNA binding
    		•  3.44642410378325 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38144578566524 bayes_pls_golite062009
  • transcription factor activity
    		•  2.83460075788873 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30467124306022 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.08341148210578 bayes_pls_golite062009
  • transcription activator activity
    		•  1.98504395280033 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.46680509390433 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.16843113623321 bayes_pls_golite062009
  • protein binding
    		•  0.753698599635855 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.42135864069093 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle