Protein Overview: gi|109504000, gi...

General Information:
Name(s) found:	gi\|149036014 [NCBI NR] gi\|109504000 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|149036014\|gb\|EDL90680.1\| rCG38820 [Rattus norvegicus] [NCBI NR] gi\|109504000\|ref\|XP_001070971.1\| PREDICTED: similar to regulator of nonsense transcripts 1 [Rattus norvegicus] [NCBI NR] rCG38820 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] PREDICTED: similar to regulator of nonsense transcripts 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=LOC684558 similar to regulator of nonsense transcripts 1 [rat-ipi-250309-contam.fasta] Isoform of A0A0U1RS25, Protein Upf1 OS=Rattus norvegicus GN=Upf1 PE=1 SV=3 [RAT.fasta.20160308]
Organism:	Rattus norvegicus
Length:	1113 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IEA]
Biological Process:	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [IEA]
Molecular Function:	DNA binding [IEA] ATP binding [IEA] zinc ion binding [IEA] helicase activity [IEA] hydrolase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTPPGG PGGAGGPGGA  60
   61 GAGGAAGQLD AQVGPEGILQ NGAVDDSVAK TSQLLAELNF EEDEEDTYYT KDLPVHACSY 120
  121 CGIHDPACVV YCNTSKKWFC NGRGNTSGSH IVNHLVRAKC KEVTLHKDGP LGETVLECYN 180
  181 CGCRNVFLLG FIPAKADSVV VLLCRQPCAS QSSLKDINWD SSQWQPLIQD RCFLSWLVKI 240
  241 PSEQEQLRAR QITAQQINKL EELWKENPSA TLEDLEKPGV DEEPQHVLLR YEDAYQYQNI 300
  301 FGPLVKLEAD YDKKLKESQT QDNITVRWDL GLNKKRIAFF TLPKTDSDMR LMQGDEICLR 360
  361 YKGDLAPLWK GIGHVIKVPD NYGDEIAIEL RSSVGAPVEV THNFQVDFVW KSTSFDRMQS 420
  421 ALKTFAVDET SVSGYIYHKL LGHEVEDVVI KCQLPKRFTA QGLPDLNHSQ VYAVKTVLQR 480
  481 PLSLIQGPPG TGKTVTSATI VYHLARQGNG PVLVCAPSNI AVDQLTEKIH QTGLKVVRLC 540
  541 AKSREAIDSP VSFLALHNQI RNMDSMPELQ KLQQLKDETG ELSSADEKRY RALKRTAERE 600
  601 LLMNADVICC TCVGAGDPRL AKMQFRSILI DESTQATEPE CMVPVVLGAK QLILVGDHCQ 660
  661 LGPVVMCKKA AKAGLSQSLF ERLVVLGIRP IRLQVQYRMH PALSAFPSNI FYEGSLQNGV 720
  721 TAADRVKKGF DFQWPQPDKP MFFYVTQGQE EIASSGTSYL NRTEAANVEK ITTKLLKAGA 780
  781 KPDQIGIITP YEGQRSYLVQ YMQFSGSLHT KLYQEVEIAS VDAFQGREKD FIILSCVRAN 840
  841 EHQGIGFLND PRRLNVALTR ARYGVIIVGN PKALSKQPLW NHLLSYYKEQ KALVEGPLNN 900
  901 LRESLMQFSK PRKLVNTVNP GARFMTTAMY DAREAIIPGS VYDRSSQGRP SNMYFQTHDQ 960
  961 ISMISAGPSH VAAMNIPIPF NLVMPPMPPP GYFGQANGPA AGRGTPKSKT GRGGRQKNRF1020
 1021 GLPGPSQTTL PNSQASQDVA SQPFSQGALT QGYVSMSQPS QMSQPGLSQP ELSQDSYLGD1080
 1081 EFKSQIDVAL SQDSTYQGER AYQHGGVTGL SQY

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Protein Overview: gi|109504000, gi...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: