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Protein Overview: gi|115476508, gi...

General Information:
Name(s) found: gi|115476508 [NCBI NR]
gi|113623819 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|115476508|ref|NP_001061850.1| Os08g0428800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113623819|dbj|BAF23764.1| Os08g0428800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAADEASKP PPLPPYPEMI LAAIEGLNEK SGSNKSAISK FIEGKYGDLP PAHASLLTAH  60
   61 LARMKESGEL IFLKNNYFRA DAPDAPPKRG RGRPPKPRDP NAPPPPPKPS SPRPRGRPPK 120
  121 SKDPISDAIP KSRGRPPKKA KTAPAPPPAA GDGSAPVKRG RGRPPKLVWP LMVATGVLVS 180
  181 GGGGSWYLCA SWTANRRHGG QIIPEQEPQS KIEFPDLDGL GGGGGGASGS GCRHPARVRV 240
  241 CVGGGDGVCV APGTSVVVVE VATVSALSSA LRRLSSPFAV PELAVALFPS VAPMLAVAPA 300
  301 GVGMCAMIGA SSSVGGSGWL VVIYILLQAE AFGSLVIGCL FCSKSYGSML QVALSLAISG 360
  361 LKARQKSIGS LSKAPLLLVG WSTFWPSLLI PSSRSRTWFV IRVELGPPVQ FRLSGLLEFL 420
  421 RFNDESYGDV LLSPVTLTPK IYGSTTNLDL VPFPWRQPKG INGLSSGVHF N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] PSI-BLAST 9.522879 Histone H5, globular domain
    2 View Details [74..373] PSI-BLAST 4.522879 No description for 1y0fA was found.
    3 View Details [374..471] MSA 2.017968 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle