| Protein: | gi|115476508, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 471 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115476508, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
252.0 | [0..189] | [471..18] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MAAADEASKP PPLPPYPEMI LAAIEGLNEK SGSNKSAISK FIEGKYGDLP PAHASLLTAH 60
61 LARMKESGEL IFL
|
| Detection Method: |  |
| Confidence: | 9.522879 |
| Match: | 1hstA |
| Description: | Histone H5, globular domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [74-373] |
1 11 21 31 41 51
| | | | | |
1 KNNYFRADAP DAPPKRGRGR PPKPRDPNAP PPPPKPSSPR PRGRPPKSKD PISDAIPKSR 60
61 GRPPKKAKTA PAPPPAAGDG SAPVKRGRGR PPKLVWPLMV ATGVLVSGGG GSWYLCASWT 120
121 ANRRHGGQII PEQEPQSKIE FPDLDGLGGG GGGASGSGCR HPARVRVCVG GGDGVCVAPG 180
181 TSVVVVEVAT VSALSSALRR LSSPFAVPEL AVALFPSVAP MLAVAPAGVG MCAMIGASSS 240
241 VGGSGWLVVI YILLQAEAFG SLVIGCLFCS KSYGSMLQVA LSLAISGLKA RQKSIGSLSK 300
301
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
|
Region A: Residues: [374-471] |
1 11 21 31 41 51
| | | | | |
1 APLLLVGWST FWPSLLIPSS RSRTWFVIRV ELGPPVQFRL SGLLEFLRFN DESYGDVLLS 60
61 PVTLTPKIYG STTNLDLVPF PWRQPKGING LSSGVHFN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
