YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115476508, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAADEASKP PPLPPYPEMI LAAIEGLNEK SGSNKSAISK FIEGKYGDLP PAHASLLTAH  60
   61 LARMKESGEL IFLKNNYFRA DAPDAPPKRG RGRPPKPRDP NAPPPPPKPS SPRPRGRPPK 120
  121 SKDPISDAIP KSRGRPPKKA KTAPAPPPAA GDGSAPVKRG RGRPPKLVWP LMVATGVLVS 180
  181 GGGGSWYLCA SWTANRRHGG QIIPEQEPQS KIEFPDLDGL GGGGGGASGS GCRHPARVRV 240
  241 CVGGGDGVCV APGTSVVVVE VATVSALSSA LRRLSSPFAV PELAVALFPS VAPMLAVAPA 300
  301 GVGMCAMIGA SSSVGGSGWL VVIYILLQAE AFGSLVIGCL FCSKSYGSML QVALSLAISG 360
  361 LKARQKSIGS LSKAPLLLVG WSTFWPSLLI PSSRSRTWFV IRVELGPPVQ FRLSGLLEFL 420
  421 RFNDESYGDV LLSPVTLTPK IYGSTTNLDL VPFPWRQPKG INGLSSGVHF N

Type	Start	End	Confidence
Cytoplasmic	1	166	0.90
Transmembrane Helix	167	190	0.90
Non-Cytoplasmic	191	249	0.86
Transmembrane Helix	250	271	0.73
Cytoplasmic	272	284	0.71
Transmembrane Helix	285	310	0.81
Non-Cytoplasmic	311	319	0.64
Transmembrane Helix	320	342	0.80
Cytoplasmic	343	368	0.72
Transmembrane Helix	369	389	0.79
Non-Cytoplasmic	390	471	0.78