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Protein Overview: gi|29735974

General Information:
Name(s) found: gi|29735974 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|29735974|ref|XP_294468.1| PREDICTED: similar to H2A histone family, member Z [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 128 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGGKAGKDS GKAKTKAVSR CQRAGLQFPV GRIHLHLKSR TTNHGRVGAT AAVYSAAILK  60
   61 YLTAEVLELA GNASKDLKVK RSTTGHLQLA IRGDEELDSL IKATIAGGGV IPHIHKSLTG 120
  121 KKGQQKTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)
    View Run MIS12 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] PSI-BLAST 46.522879 Histone H2A

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  4.57339366278729 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.71983173426562 bayes_pls_golite062009
  • binding
    		•  3.27510691458843 bayes_pls_golite062009
  • DNA binding
    		•  2.84801656088633 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.73664032839239 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.30478015157761 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.21819833304707 bayes_pls_golite062009
  • protein binding
    		•  1.07873333188144 bayes_pls_golite062009
  • centromeric DNA binding
    		•  1.03586371237592 bayes_pls_golite062009
  • transcription factor activity
    		•  1.01889555697279 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  0.725138319268162 bayes_pls_golite062009
  • transferase activity
    		•  0.424228486183795 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • transcription factor binding
    		•  0.20278000165075 bayes_pls_golite062009
  • transcription activator activity
    		•  0.16305156761639 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.0427278296123499 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle