YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: REX4

General Information:
Name(s) found: REX4 / YOL080C [SGD]
Description(s) found:
Found 24 descriptions.
SHOW ALL
  • Putative RNA exonuclease possibly involved in pre-rRNA processing and ribosome assembly [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome assembly [IMPLink to PubMed article]
    rRNA processing [IGILink to PubMed article]
    Molecular Function: 3'-5' exonuclease activity [IMPLink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSSNWQAL LASESNPTSN GKNKQSNRKI RNVKKVSKTV NVSSTTQYAP RKRKNGSKIM  60
   61 DMVYNMNKEI SKHEKDKLEG KVFEFNPNKA NTSTTIKEPV KVGISEDTRI NSNKSKEIGK 120
  121 YIAMDCEFVG VGPEGKESAL ARISIVNYFG HVVLDEFVKP REKVVEWRTW VSGIKPEHMK 180
  181 NAITFKEAQK KTADILEGRI LVGHALKHDL EALMLSHPKS LLRDTSRHLP FRKLYAKGKT 240
  241 PSLKKLTREV LKISIQEGEH SSVEDARATM LLYKKEKTEF EKIHRNTFN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run BIR1 No Comments Widlund PO, et al. (2005)
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data REX4 and NOP56 Huh WK, et al. (2003)
    View Data REX4 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] deduced N/A No confident structure predictions are available.
    2 View Details [109..289] PSI-BLAST 18.522879 Exonuclease I


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle