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Protein Overview: YLL056C

General Information:
Name(s) found: YLL056C [SGD]
Description(s) found:
Found 33 descriptions.
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  • Putative protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p and genes involved in pleiotropic drug resistance (PDR); expression is induced in cells treated with the mycotoxin patulin [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVFITGASG FIGSAVLSEL ISSGHEVVGL ARSDEAAAKI KSIDPAAKIL RGDLKDLEIL  60
   61 KKGATESDGV IHLGFVHDFK NFEQCCEIDR QATVAMLESL KGSNKPFLYT NGTLSLRPNK 120
  121 VANEQDGIDE DSKILRAVTE QVALSYKDKG VSARIVRLPF SVHGKGDKAF VPILMNIAKA 180
  181 AGKSGYVGQG TNAWAAVHRL DTAPLFRLVL EKGKTGQVYH CVGEQGIPFK DIARVIGEIL 240
  241 NVPVASIPVD DAESHFGFLT CFVTRDGPVS SEGTRKELGW QPQQIGLLED IRANYSLN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen UBC7 YLL056C 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166]
    [192..227]
    [264..288]    		 PSI-BLAST 90.154902 dTDP-glucose 4,6-dehydratase (RmlB)
    2 View Details [167..191]
    [228..263]
    [289..298]    		 PSI-BLAST 90.154902 dTDP-glucose 4,6-dehydratase (RmlB)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.881088609158401 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle