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Protein Overview: LOT5

General Information:
Name(s) found: LOT5 / YKL183W [SGD]
Description(s) found:
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  • gi|6322665|ref|NP_012738.1| Protein of unknown function; gene expression increases in cultures shifted to a lower temperature; Lot5p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|486323|emb|CAA82026.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|465689|sp|P34234.1|LOT5_YEAST RecName: Full=Protein LOT5; AltName: Full=Low temperature-responsive protein 5 [NCBI NR]
  • pir||S34687 hypothetical protein YKL183w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|395242|emb|CAA52255.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • Uncharacterized protein YKL183W - Saccharomyces cerevisiae (Baker's yeast) [Swiss-Prot]
  • Protein LOT5 OS=Saccharomyces cerevisiae GN=LOT5 PE=1 SV=1 [Swiss-Prot]
  • LOT5 Protein of unknown function, gene expression increases in cultures shifted to a lower temperature [mips]
  • Protein of unknown function; gene expression increases in cultures shifted to a lower temperature [SGD]
  • LOT5, Chr XI from 98723-99643 [yeast_orfs2]
  • Chr XI from 98723-99643 [yeastorf3.fasta]
  • Chr XI from 98722-99642 [yeastorf4.fasta]
  • (P34234) Hypothetical 34.3 kDa protein in ORD1-FAS1 intergenic region [4932.FASTACCERV.txt]
  • LOT5 SGDID:S0001666, Chr XI from 98726-99646, Verified ORF [yeastflysequest.fasta]
  • Lot5p [Saccharomyces cerevisiae]gi|486323|emb|CAA82026.1| unnamed protein product [Saccharomyces cerevisiae]gi|395242|emb|CAA52255.1| unnamed protein product [Saccharomyces cerevisiae]gi|419841|pir||S34687 hypothetical protein YKL183w - yeast (Saccharo [nrdb_11152004_Chlamydomonas]
  • LOT5 SGDID:S000001666, Chr XI from 98726-99646, Verified ORF, "Protein of unknown function; gene expression increases in cultures shifted to a lower temperature" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Protein of unknown function; gene expression increases in cultures shifted to a lower temperature; Lot5p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Uncharacterized protein YKL183W [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Protein LOT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LOT5 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • LOT5 SGDID:S000001666, Chr XI from 98721-99641, Genome Release 64-1-1, Verified ORF, "Protein of unknown function; gene expression increases in cultures shifted to a lower temperature" [yeast-030211-contam.fasta]
  • LOT5 SGDID:S000001666, Chr XI from 98721-99641, Genome Release 64-2-1, Verified ORF, "Protein of unknown function; gene expression increases in cultures shifted to a lower temperature; protein abundance increases in response to DNA replication stress" [20141208_orf_trans.fasta]
  • YKL183W SGDID:S000001666, Chr XI from 98721-99641, Genome Release 64-1-1, Verified ORF, "Protein of unknown function; gene expression increases in cultures shifted to a lower temperature" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKKPKCQI ARTKPSVENV IPYNQFKKTQ PRFNGNFSAL NNEEYIILFG GGRDLILGSL  60
   61 TPCSSSHLSN QANPQDTSEY GTDLFILNSC IIIWFNGLGY GLEIPYSSVL YHASRRLPDG 120
  121 REGLQLEILL TLERDEVLDM LYQSLAPQAC EFDGEEAHAF TVRSVELTIR PKYSIYDRHY 180
  181 NNEIETLFTF ENFGVNRGDD LVNNCNEALA VCMDLHGEDV QDQDQEQYQD PSMAFEGAQD 240
  241 LNATYSGLGD TLHGPPVYQN DGLADDLDGD LVMDNVVSRG GPEASMSMEF YANQNLAGRK 300
  301 NSRDNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data LOT5 Huh WK, et al. (2003)

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..306] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle