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View Structure Prediction Details

Protein: LOT5
Organism: Saccharomyces cerevisiae
Length: 306 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOT5.

Description E-value Query
Range
Subject
Range
LOT5_YEAST - Protein LOT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LOT5 PE=1 SV=1
LOT5 - Protein of unknown function; gene expression increases in cultures shifted to a lower temperature
0.0 [1..306] [1..306]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKKPKCQI ARTKPSVENV IPYNQFKKTQ PRFNGNFSAL NNEEYIILFG GGRDLILGSL  60
   61 TPCSSSHLSN QANPQDTSEY GTDLFILNSC IIIWFNGLGY GLEIPYSSVL YHASRRLPDG 120
  121 REGLQLEILL TLERDEVLDM LYQSLAPQAC EFDGEEAHAF TVRSVELTIR PKYSIYDRHY 180
  181 NNEIETLFTF ENFGVNRGDD LVNNCNEALA VCMDLHGEDV QDQDQEQYQD PSMAFEGAQD 240
  241 LNATYSGLGD TLHGPPVYQN DGLADDLDGD LVMDNVVSRG GPEASMSMEF YANQNLAGRK 300
  301 NSRDNE

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle