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Protein Overview: YDR539W

General Information:
Name(s) found: YDR539W [SGD]
Description(s) found:
Found 30 descriptions.
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  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YDR539W is not an essential gene; homolog of E. coli UbiD [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 503 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLNPALEF RDFIQVLKDE DDLIEITEEI DPNLEVGAIM RKAYESHLPA PLFKNLKGAS  60
   61 KDLFSILGCP AGLRSKEKGD HGRIAHHLGL DPKTTIKEII DYLLECKEKE PLPPITVPVS 120
  121 SAPCKTHILS EEKIHLQSLP TPYLHVSDGG KYLQTYGMWI LQTPDKKWTN WSIARGMVVD 180
  181 DKHITGLVIK PQHIRQIADS WAAIGKANEI PFALCFGVPP AAILVSSMPI PEGVSESDYV 240
  241 GAILGESVPV VKCETNDLMV PATSEMVFEG TLSLTDTHLE GPFGEMHGYV FKSQGHPCPL 300
  301 YTVKAMSYRD NAILPVSNPG LCTDETHTLI GSLVATEAKE LAIESGLPIL DAFMPYEAQA 360
  361 LWLILKVDLK GLQALKTTPE EFCKKVGDIY FRTKVGFIVH EIILVADDID IFNFKEVIWA 420
  421 YVTRHTPVAD QMAFDDVTSF PLAPFVSQSS RSKTMKGGKC VTNCIFRQQY ERSFDYITCN 480
  481 FEKGYPKGLV DKVNENWKRY GYK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YDR539W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..503] Pfam 202.49485 3-octaprenyl-4-hydroxybenzoate carboxy-lyase No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
    		•  0.806130882178534 bayes_pls_golite062009
  • catalytic activity
    		•  0.660906721832294 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle