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Protein Overview: YDR161W

General Information:
Name(s) found: YDR161W [SGD]
Description(s) found:
Found 27 descriptions.
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  • Putative protein of unknown function; non-essential gene; proposed function in rRNA and ribosome biosynthesis based on transcriptional co-regulation; genetic interactions suggest a role in ER-associated protein degradation (ERAD) [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 387 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELEATIRQ AKEALAENNA KKALKILKPF KSSLKKENAN NVILNEVFAD AYLDNGQVEK  60
   61 AYPILARACE LDPEGQVGGP DKFFTMGQIM GGQDGVSIIT RGIMNISNTG GEMLTNVQVE 120
  121 KIVGGLLSVI EIWMTDLCME PNAEEQCEEL IQKAMELTEG KSPETWSTLG SIKISQQKFG 180
  181 EAYEAFSQAW NFFELKKQEI GSGINENGDT TQKAGLQSEY VDLLQPLLSL TKMCLEVGAY 240
  241 EVALKVIAAV RDIDEDNIEG YYLEGFTYYL MSKLEIFKLN NPEVSLRPEN IYEFNQLIQE 300
  301 VPLDLSHEPI SQLIYDSRLA LSFALQAGVN ADSKDEIVQE LLGGANALLQ EIGGPLDPSE 360
  361 LTQIKKGDLV NENEDLEELD IEEEYSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YDR161W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] ORFEUS 12.5 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
    2 View Details [128..217] ORFEUS 12.5 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
    3 View Details [218..387] ORFEUS 12.5 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.26999948840808 bayes_pls_golite062009
  • protein binding
    		•  0.305336743191506 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle