Protein Overview: YCR016W

General Information:
Name(s) found:	YCR016W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|51012675\|gb\|AAT92631.1\| YCR016W [Saccharomyces cerevisiae] [NCBI NR] gi\|49066024\|sp\|P25617.2\|YCQ6_YEAST RecName: Full=Uncharacterized protein YCR016W [NCBI NR] gi\|14588930\|emb\|CAC42971.1\| hypothetical protein [Saccharomyces cerevisiae] [NCBI NR] gi\|10383784\|ref\|NP_009942.2\| Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; YCR016W is not an essential gene; Ycr016wp [Saccharomyces cerevisiae] [NCBI NR] Uncharacterized protein YCR016W OS=Saccharomyces cerevisiae GN=YCR016W PE=1 SV=2 [Swiss-Prot] Protein of unknown function localised to nucleolus [mips] Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; predicted to be involved in ribosome biogenesis [SGD] YCR016W, Chr III from 143628-144500 [yeast_orfs2] Chr III from 143628-144500 [yeastorf3.fasta] (P25617) Hypothetical protein YCR016W [4932.FASTACCERV.txt] YCR016W SGDID:S0000609, Chr III from 143631-144503, Uncharacterized ORF [yeastflysequest.fasta] Ycr016wp [Saccharomyces cerevisiae]gi\|51012675\|gb\|AAT92631.1\| YCR016W [Saccharomyces cerevisiae]gi\|14588930\|emb\|CAC42971.1\| hypothetical protein [Saccharomyces cerevisiae]gi\|49066024\|sp\|P25617\|YCQ6_YEAST Hypothetical protein YCR016W [nrdb_11152004_Chlamydomonas] YCR016W SGDID:S000000609, Chr III from 143631-144503, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YCR016W SGDID:S000000609, Chr III from 143632-144504, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; YCR016W is not an essential gene" [yeast-contam.fasta] YCR016W SGDID:S000000609, Chr III from 143632-144504, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; predicted to be involved in ribosome biogenesis" [SGD_S-cerevisiae_na_05-08-2009_con_reversed.fasta] Uncharacterized protein YCR016W [nr-271106-contam.fasta] Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; YCR016W is not an essential gene; Ycr016wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] YCR016W [Saccharomyces cerevisiae] [nr-271106-contam.fasta] hypothetical protein [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] Uncharacterized protein YCR016W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR016W PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YCR016W SGDID:S000000609, Chr III from 143634-144506, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; predicted to be involved in ribosome biogenesis" [yeast-030211-contam.fasta] YCR016W SGDID:S000000609, Chr III from 143634-144506, Genome Release 64-2-1, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; predicted to be involved in ribosome biogenesis" [20141208_orf_trans.fasta]
Organism:	Saccharomyces cerevisiae
Length:	290 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] nucleolus [IDA]
Biological Process:	ribosome biogenesis [RCA]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENHVPAWK RIALKRQTIS SGDESKEKGQ SNLIDDDPLN ITTHLSTGNL TKKEKKRIIN  60
   61 GESKSSTKKG KRVSKPGTKK KEKLSKDEKN SKKNKILKDQ LRYLIEFFRT KSESKFPTGI 120
  121 LELESVKENY GDSLIKDEPS ESGVVEVWKF SKQKQNWLIK HFFNLDEIPS VYNDLLLLYF 180
  181 RDLQGKSKEE LISKCKGKLK QWNDYVEDQE TKIKALIAED KASEPINGEE KEEGEKDGNA 240
  241 EQGKQKEVQD EQEEVQMPNK ELVQRSLKLL EIWKNDDSEQ IELKNFFVDV

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Riffle et al. (2010) (Unpublished Data)		RPF2 YCR016W
View Details	Krogan NJ, et al. (2006)		COQ10 DBP3 DSE4 GAR1 KRI1 KRR1 NHP2 NOP10 NOP6 YCR016W YDR381C-A
View Details	Qiu et al. (2008)		NUG1 YCR016W

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	CTF13	YCR016W	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YCR016W and NOP56	Huh WK, et al. (2003)
View Data	YCR016W	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..226]	MSA	2.003958	View MSA. No confident structure predictions are available.
2	View Details	[227..290]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2