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Protein Overview: YBL113C

General Information:
Name(s) found: YBL113C [SGD]
Description(s) found:
Found 20 descriptions.
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  • Helicase-like protein encoded within the telomeric Y' element [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 792 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNQRKEKK GQHVGCCGSR TDLSADTVEL IERMDRLAEN QATASMSIVA LPSSFQESNS  60
   61 SDRCRKYCSS DEDSDTCIHG SANASTNATT NSSTNATTTA SINVRTSATT TASINVRTSA 120
  121 TTTESTNSNT NATTTESTNS STNATTTASI NVRTSATTTE STNSSTNATT TASINVRTSA 180
  181 TTTESTNSST NATTTASINV RTSATTTEST NSNTNASTNA TTNSSTNATT TASTNVRTSA 240
  241 TTNATTNSST NATTTASTNV RTSATTTAST NVRTSATTTA SINVRTSATT TESINSSTNA 300
  301 TTTESTNSNT SATTTESTDS NTNATTTASI NVRTSATTTE STNSNTSATT TESTDSNTSA 360
  361 TTTASTNSST NATTTASTNS STNATTTEST NASAKEDANK DGNAEDNRFH PVTDINKESY 420
  421 KRKGSQMVFL ERKKLKAQFP NTSENMNVLQ FLGFRSDEIK HLFLYGIDIY FCPEGVFTQY 480
  481 GLCKGCQKMF GLCVCWAGQK VSYRRIAWEA LAVERMLRND EEYKEYLEDI EPYHGDPVGY 540
  541 LKYFSVKRRE IYSQIQRNYA WYLAITRRRE TISVLDSTRG KQGSQVFRMS GRQIKELYYK 600
  601 VWSNLRESKT EVLQYFLNWD EKKCREEWEA KDDTVFVEAL EKVGVFQRLR SMTSAGLQGP 660
  661 QYVKLQFSRH HRQLRSRYEL SLGMHLRDQL ALGVTPSKVP HWTAFLSMLI GLFYNKTFRQ 720
  721 KLEYLLEQIS EMWLLPHWLD LANVEVLAAD NTRVPLYMLM VAVHKELDSD DVPDGRFDII 780
  781 LLCRDSSREV GE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..372] ab initio 14.87 No description for 1i3qA was found.
    2 View Details [373..522] deduced N/A No confident structure predictions are available.
    3 View Details [523..694] MSA 3.02898 View MSA. No confident structure predictions are available.
    4 View Details [695..792] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle