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Protein Overview: YBL036C

General Information:
Name(s) found: YBL036C [SGD]
Description(s) found:
Found 33 descriptions.
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  • Putative non-specific single-domain racemase based on structural similarity; binds pyridoxal 5'-phosphate; expression of GFP-fusion protein induced in response to the DNA-damaging agent MMS [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: intracellular [ICLink to PubMed article]
    Biological Process: cellular amino acid metabolic process [IDALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [IDALink to PubMed article]
    alanine racemase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGITYDED RKTQLIAQYE SVREVVNAEA KNVHVNENAS KILLLVVSKL KPASDIQILY  60
   61 DHGVREFGEN YVQELIEKAK LLPDDIKWHF IGGLQTNKCK DLAKVPNLYS VETIDSLKKA 120
  121 KKLNESRAKF QPDCNPILCN VQINTSHEDQ KSGLNNEAEI FEVIDFFLSE ECKYIKLNGL 180
  181 MTIGSWNVSH EDSKENRDFA TLVEWKKKID AKFGTSLKLS MGMSADFREA IRQGTAEVRI 240
  241 GTDIFGARPP KNEARII

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) MRPS8 TYS1 YBL036C
    View Details Ho Y, et al. (2002) ADK1 AVO1 FET4 HXT6 HXT7 PDC6 SES1 YBL036C

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YBL036C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 1540.69897 "Hypothetical" protein ybl036c

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • alanine racemase activity
    		•  2.62362449847897 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  2.31165775898309 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  2.17003836264776 bayes_pls_golite062009
  • catalytic activity
    		•  1.23611818854966 bayes_pls_golite062009
  • diaminopimelate decarboxylase activity
    		•  0.492894938678183 bayes_pls_golite062009
  • binding
    		•  0.349413451832348 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.328743179708914 bayes_pls_golite062009
  • lyase activity
    		•  0.320782640542698 bayes_pls_golite062009
  • protein binding
    		•  0.20402482036521 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.14065879331273 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle