YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SWC3

General Information:
Name(s) found: SWC3 / YAL011W [SGD]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • Protein of unknown function, component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 638 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Swr1 complex [IDALink to PubMed articleLink to PubMed article]
    Biological Process: chromatin remodeling [IDALink to PubMed article][IGILink to PubMed article][IMPLink to PubMed article]
    response to drug [IMPLink to PubMed article]
    histone exchange [IPILink to PubMed article]
    endoplasmic reticulum organization [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFGSNARRR QVRMPAVLRT RSKESSIEQK PASRTRTRSR RGKRGRDDDD DDDDEESDDA  60
   61 YDEVGNDYDE YASRAKLATN RPFEIVAGLP ASVELPNYNS SLTHPQSIKN SGVLYDSLVS 120
  121 SRRTWVQGEM FELYWRRPKK IVSESTPAAT ESPTSGTIPL IRDKMQKMCD CVMSGGPHTF 180
  181 KVRLFILKND KIEQKWQDEQ ELKKKEKELK RKNDAEAKRL RMEERKRQQM QKKIAKEQKL 240
  241 QLQKENKAKQ KLEQEALKLK RKEEMKKLKE QNKNKQGSPS SSMHDPRMIM NLNLMAQEDP 300
  301 KLNTLMETVA KGLANNSQLE EFKKFIEIAK KRSLEENPVN KRPSVTTTRP APPSKAKDVA 360
  361 EDHRLNSITL VKSSKTAATE PEPKKADDEN AEKQQSKEAK TTAESTQVDV KKEEEDVKEK 420
  421 GVKSEDTQKK EDNQVVPKRK RRKNAIKEDK DMQLTAFQQK YVQGAEIILE YLEFTHSRYY 480
  481 LPKKSVVEFL EDTDEIIISW IVIHNSKEIE KFKTKKIKAK LKADQKLNKE DAKPGSDVEK 540
  541 EVSFNPLFEA DCPTPLYTPM TMKLSGIHKR FNQIIRNSVS PMEEVVKEME KILQIGTRLS 600
  601 GYNLWYQLDG YDDEALSESL RFELNEWEHA MRSRRHKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run SWC4 No Comments Hazbun TR, et al. (2003)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..52] deduced N/A No confident structure predictions are available.
    2 View Details [53..444] PSI-BLAST 25.69897 Heavy meromyosin subfragment
    3 View Details [445..638] MSA 8.049995 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle