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Protein Overview: gi|19113048

General Information:
Name(s) found: gi|19113048 [NCBI NR]
Description(s) found:
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  • gi|19113048|ref|NP_596256.1| hypothetical protein SPBC15D4.16 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • hypothetical protein SPBC15D4.16 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 628 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEDKSFGI GMLDYNRENP ESSGHSRVAV IRKQKTEQEN NNLSWEDRHY IPDLHKSNKI  60
   61 KTPTSLADEK KSHNELDPKA QIKKLMETRS GGTYIPPAKL KALQAQLTDV NTPEYQRMQW 120
  121 EALKKSINGL INKVNKSNIR DIIPELFQEN IIRGRALYCR SIMKAQAASL PFTPIYAAMT 180
  181 AVINTKFPQI GELLLTRLIV QFRKSFQRND KSMCISSSSF IAHLINQKIA HEIVGLQILA 240
  241 VLLERPTNDS IEIAVMLLRE IGAYLAEVST RAYNGVFERF RTILHEGQLE RRTQFIIEVL 300
  301 FQTRKDKFKN NPTIPQELDL VEEEDQITHY ISLDDNLDVQ ESLGIFHYDP DYEENEKKYD 360
  361 AIKHEILGEE DDDENEEDEE DSEETSESEE DESVNDEKPQ VIDQTNASLV NLRKSIYLTI 420
  421 MSSVDFEECC HKLLKIDLPE GQEIELCNMV IECNSQERTY AKFYGLIGER FCKLSRTWRS 480
  481 TYEQCFKNYY ETIHRYETNR LRNIALFFAN LLSTDSIGWE VYDCVRLTED DTTASSRIFL 540
  541 KIMFQEIVEA LGLKSLVERL HDPNLVPYLH GLFPVDEARN VRFSINYFTS IGLGALTEEM 600
  601 REYLLTMPKS EPKEQDSEGY SSGSETGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] MSA 2.171995 View MSA. No confident structure predictions are available.
    2 View Details [91..331] PSI-BLAST 49.39794 Eukaryotic initiation factor eIF4G
    3 View Details [332..628] FFAS03 2.68 CBP80, 80KDa nuclear cap-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  4.20683443264388 bayes_pls_golite062009
  • mRNA binding
    		•  2.49094746544717 bayes_pls_golite062009
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.39201458088376 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • protein binding
    		•  1.04044934052933 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • RNA cap binding
    		•  0.66277586901495 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
    		•  4.05046860305563 bayes_pls_golite062009
  • binding
    		•  2.36800795249393 bayes_pls_golite062009
  • mRNA binding
    		•  2.35042158577052 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59410102249793 bayes_pls_golite062009
  • structural molecule activity
    		•  1.3916221897201 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08645493064764 bayes_pls_golite062009
  • DNA binding
    		•  0.956143892328242 bayes_pls_golite062009
  • protein binding
    		•  0.914877292844892 bayes_pls_golite062009
  • transcription factor activity
    		•  0.371244009721798 bayes_pls_golite062009
  • RNA cap binding
    		•  0.357520253345298 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle