| Protein: | gi|3451474, gi|1... |
| Organism: | Schizosaccharomyces pombe |
| Length: | 628 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3451474, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
665.0 | [0..2] | [609..35] |
|
|
664.0 | [0..2] | [609..34] |
|
|
657.0 | [0..2] | [609..35] |
|
|
656.0 | [0..1] | [627..1] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MEKEDKSFGI GMLDYNRENP ESSGHSRVAV IRKQKTEQEN NNLSWEDRHY IPDLHKSNKI 60
61 KTPTSLADEK KSHNELDPKA QIKKLMETRS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [91-331] |
1 11 21 31 41 51
| | | | | |
1 GGTYIPPAKL KALQAQLTDV NTPEYQRMQW EALKKSINGL INKVNKSNIR DIIPELFQEN 60
61 IIRGRALYCR SIMKAQAASL PFTPIYAAMT AVINTKFPQI GELLLTRLIV QFRKSFQRND 120
121 KSMCISSSSF IAHLINQKIA HEIVGLQILA VLLERPTNDS IEIAVMLLRE IGAYLAEVST 180
181 RAYNGVFERF RTILHEGQLE RRTQFIIEVL FQTRKDKFKN NPTIPQELDL VEEEDQITHY 240
241 I
|
| Detection Method: | |
| Confidence: | 49.39794 |
| Match: | 1hu3A |
| Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| binding | 2.47395644967726 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| structural molecule activity | 1.39201458088376 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| RNA cap binding | 0.66277586901495 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
|
Region A: Residues: [332-628] |
1 11 21 31 41 51
| | | | | |
1 SLDDNLDVQE SLGIFHYDPD YEENEKKYDA IKHEILGEED DDENEEDEED SEETSESEED 60
61 ESVNDEKPQV IDQTNASLVN LRKSIYLTIM SSVDFEECCH KLLKIDLPEG QEIELCNMVI 120
121 ECNSQERTYA KFYGLIGERF CKLSRTWRST YEQCFKNYYE TIHRYETNRL RNIALFFANL 180
181 LSTDSIGWEV YDCVRLTEDD TTASSRIFLK IMFQEIVEAL GLKSLVERLH DPNLVPYLHG 240
241 LFPVDEARNV RFSINYFTSI GLGALTEEMR EYLLTMPKSE PKEQDSEGYS SGSETGS
|
| Detection Method: | |
| Confidence: | 2.68 |
| Match: | 1n52A |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.05046860305563 | bayes_pls_golite062009 |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| mRNA binding | 2.35042158577052 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59410102249793 | bayes_pls_golite062009 |
| structural molecule activity | 1.3916221897201 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| protein binding | 0.914877292844892 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| RNA cap binding | 0.357520253345298 | bayes_pls_golite062009 |
