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Protein Overview: gi|56785318, gi|...

General Information:
Name(s) found: gi|56785318 [NCBI NR]
gi|125571797 [NCBI NR]
Description(s) found:
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  • gi|56785318|dbj|BAD82278.1| rev protein (42.9 kD)-like [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125571797|gb|EAZ13312.1| hypothetical protein OsJ_03235 [Oryza sativa Japonica Group] [NCBI NR]
  • rev protein (42.9 kD)-like [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEGDASAL VAAAEGRKPR HKGKHDKPKP WDDDPNIDHW KIEEFDPSWN EGGMLEVTSF  60
   61 STLFPQYRGK SPHPTPPSAL SWFLPRSAID WFCLVVKKYL QEAWPIVKGA LKEFGVACEL 120
  121 NLVEGSMTVS TTRKTKDPYI IIKANELIKL LSRSVPAPQA IKILNDEMSC AIIKIGSIIR 180
  181 NKERFVKRRG RLLGPNLSTL KAIEILTGCY ILVQGNTAAA MGYWKGLKQV VRVVEDCIKN 240
  241 VKHPVYHIKE LLIKRELVKN PALAHESWDK FLPKFKKKNV KQKKPLTKEK KQYTPFPPPQ 300
  301 QPSKIDLELE SGECFMSDKK KSAKEWQEKL EKQSQKAEEN KRKREAAFVH PNEDIATPYE 360
  361 SAKSIINNGE IADMAKSLKK KAKELRKNEE QENVRLESYV ASNEGSRPKK KHKLSKYSQP 420
  421 E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] MSA 1.054986 View MSA. No confident structure predictions are available.
    2 View Details [69..222] PSI-BLAST 30.69897 Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix
    3 View Details [223..421] PSI-BLAST 3.522879 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  6.07437653952404 bayes_pls_golite062009
  • mRNA binding
    		•  4.07599584461947 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • binding
    		•  2.8667878224392 bayes_pls_golite062009
    		• 1.56143840583911 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
  • protein binding
    		•  0.934192915895039 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.9296581376632 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.3686746342524 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle