| Protein: | gi|56785318, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 421 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56785318, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
322.0 | [0..1] | [408..1] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MASEGDASAL VAAAEGRKPR HKGKHDKPKP WDDDPNIDHW KIEEFDPSWN EGGMLEVTSF 60
61 STLFPQYR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [69-222] |
1 11 21 31 41 51
| | | | | |
1 GKSPHPTPPS ALSWFLPRSA IDWFCLVVKK YLQEAWPIVK GALKEFGVAC ELNLVEGSMT 60
61 VSTTRKTKDP YIIIKANELI KLLSRSVPAP QAIKILNDEM SCAIIKIGSI IRNKERFVKR 120
121 RGRLLGPNLS TLKAIEILTG CYILVQGNTA AAMG
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1tuaA |
| Description: | Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.07437653952404 | bayes_pls_golite062009 |
| mRNA binding | 4.07599584461947 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 2.8667878224392 | bayes_pls_golite062009 |
| 1.56143840583911 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| protein binding | 0.934192915895039 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.9296581376632 | bayes_pls_golite062009 |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.3686746342524 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
|
Region A: Residues: [223-421] |
1 11 21 31 41 51
| | | | | |
1 YWKGLKQVVR VVEDCIKNVK HPVYHIKELL IKRELVKNPA LAHESWDKFL PKFKKKNVKQ 60
61 KKPLTKEKKQ YTPFPPPQQP SKIDLELESG ECFMSDKKKS AKEWQEKLEK QSQKAEENKR 120
121 KREAAFVHPN EDIATPYESA KSIINNGEIA DMAKSLKKKA KELRKNEEQE NVRLESYVAS 180
181 NEGSRPKKKH KLSKYSQPE
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
