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Protein Overview: gi|109473525, gi...

General Information:
Name(s) found: gi|62647312 [NCBI NR]
gi|157823287 [NCBI NR]
gi|149033305 [NCBI NR]
gi|109473525 [NCBI NR]
Description(s) found:
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  • gi|62647312|ref|XP_575485.1| PREDICTED: similar to Caspase recruitment domain-containing protein 4 [Rattus norvegicus] [NCBI NR]
  • gi|157823287|ref|NP_001102706.1| nucleotide-binding oligomerization domain containing 1 [Rattus norvegicus] [NCBI NR]
  • gi|149033305|gb|EDL88106.1| similar to Caspase recruitment domain protein 4 (predicted) [Rattus norvegicus] [NCBI NR]
  • gi|109473525|ref|XP_001058165.1| PREDICTED: similar to Caspase recruitment domain-containing protein 4 [Rattus norvegicus] [NCBI NR]
  • Tax_Id=10116 PREDICTED: similar to Caspase recruitment domain protein 4 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 108 kDa protein [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta]
  • nucleotide-binding oligomerization domain containing 1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • similar to Caspase recruitment domain protein 4 (predicted) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 107KDA PROTEIN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • PREDICTED: similar to Caspase recruitment domain-containing protein 4 [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Nod1 nucleotide-binding oligomerization domain containing 1 [rat-ipi-250309-contam.fasta]
  • Similar to Caspase recruitment domain protein 4 (Predicted) OS=Rattus norvegicus GN=Nod1 [011711_HMR.fasta]
  • Similar to Caspase recruitment domain protein 4 (Predicted) OS=Rattus norvegicus GN=Nod1 PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Protein Nod1 OS=Rattus norvegicus GN=Nod1 PE=4 SV=1 [Aridor_1205.fasta]
  • Protein Nod1 OS=Rattus norvegicus GN=Nod1 PE=1 SV=1 [RAT.fasta.20160308]
    • Organism: Rattus norvegicus
    Length: 953 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [UNKNOWN]
    intracellular [IEA]
    Biological Process: interleukin-8 biosynthetic process [UNKNOWN]
    positive regulation of I-kappaB kinase/NF-kappaB cascade [UNKNOWN]
    regulation of apoptosis [IEA]
    defense response to bacterium [UNKNOWN]
    intracellular signaling pathway [UNKNOWN]
    induction of apoptosis [UNKNOWN]
    positive regulation of JNK cascade [UNKNOWN]
    positive regulation of ERK1 and ERK2 cascade [UNKNOWN]
    detection of bacterium [UNKNOWN]
    positive regulation of tumor necrosis factor production [UNKNOWN]
    activation of caspase activity [UNKNOWN]
    positive regulation of interleukin-6 production [UNKNOWN]
    positive regulation of stress-activated MAPK cascade [UNKNOWN]
    defense response to Gram-positive bacterium [UNKNOWN]
    Molecular Function: identical protein binding [UNKNOWN]
    protein binding [UNKNOWN][IEA]
    CARD domain binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKRGQHEME GVPAGCHSHI KLLRINREHL VTNIRNTQCL VDNLLENGYF SAEDAEIVCA  60
   61 CPTQPDKVRK ILDLVQSKGE EVSEFFLYVL QQLEDAYVDL RLWLSEIGFS PSQLIRTKTI 120
  121 VNTDPVSRYT QQLRHQLGRD SKFMLCYAQK EDLLLEETYM DTLMELVGFN NENLGSLGGL 180
  181 DCLLDHSTGV LNEHGETVFV FGDAGVGKSM LLQRLQSLWA SGRLASKAKF FFHFRCRMFS 240
  241 CFKESDTLTL QDLLFKHFCY PEQDPEEVFS FLLRFPHTAL FTFDGLDELH SDFDMSRVPD 300
  301 SCCPWEPAHP LVLLANLLSG RLLKGAGKLL TARTGVEVPR QLLRKKVLLR GFSPSHLRAY 360
  361 ARRMFPERTA QEHLLQQLDA NPNLCSLCGV PLFCWIIFRC FQHFHTAFEG SSQLPDCAVT 420
  421 LTDVFLLVTE VHLNRTQPIS LMQRNTRSPA ETLRAGWRTL QALGEVAHRG TDRSLFVFGQ 480
  481 EEVQASKLQE GDLQLGFLRA LPDVGPEQSQ QSYEFFHLTL QAFFTAFFLV ADDKVSTQEL 540
  541 LRFFREWTSP GEATSRSCYP SFFSFQCLGS GSRLGPDPFK NKDHFQFTNL FLCGLLAKAR 600
  601 QKLLQQLVPK AILRKKRKAL WAHLFASLRS YLKSLPRVQS DGFNQVHAMP TFLWMLRCIY 660
  661 ETQSQKVGRL AARGISADYL KLAFCNACSA DCSALSFVLH HFHRQLALDL DNNNLNDYGV 720
  721 RELQPCFSRL TVIRLSVNQI TDMGVKVLCE ELTKYKIVTF LGLYNNQITD IGARYVAQIL 780
  781 DECRGLTHLK LGKNRITSEG GRCVAQAVKN STSIVEVGMW GNQIGDEGAK AFAEALRDHP 840
  841 SLTTLSLAFN GISPEGGKSL AQALKQNTTL TIIWLTKNEL NDEAAECFAE MLRVNQTLKH 900
  901 LWLIQNHITA EGTAQLARAL QKNTTITEIC LNGNLIKPEE AKVFENEKRI ICF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle