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Protein Overview: gi|61677894, gi|...

General Information:
Name(s) found: gi|62473646 [NCBI NR]
gi|61677894 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|62473646|ref|NP_001014736.1| HDAC4, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|61677894|gb|AAX52490.1| HDAC4, isoform C [Drosophila melanogaster] [NCBI NR]
    • Organism: Drosophila melanogaster
    Length: 1199 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    histone deacetylase complex [IEA]
    Biological Process: chromatin modification [IEA]
    regulation of transcription [IDA]
    Molecular Function: histone deacetylase activity [IDA][ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPDDRIPI HDLPSEAGSD ERLLHITPAT LTLDFKPHPA VDIDQQIMEL KKSQELQKQR  60
   61 LINSFQEQSK QMELEHKLQL EHKYQFAVNS HGAFQELRNE SMVTAAAAAV AQEQHRQQLH 120
  121 QQQQQHQQQQ QQQQHQQQQQ QQQARGRDGM KLKQNCSANA SPEVKQILNC FILSRKSQAA 180
  181 ASNGTTTTSP YRNRGVVKSS SGESLPAGTV TSAHPYKIPQ PPPSLLKYES DFPLRKTDCN 240
  241 STPDSGPNSP PSAAALAVGV VGSRGSPTSA PIQEENEEGS QYQPGQRSSI NDLPLFSSPS 300
  301 LPNISLGRPH LPNSAQAHAQ VNAQVAAQAQ AQAQAQAQAH AMFAALAAAQ GGCGQPGYYN 360
  361 PLGMAFVGRQ PAPLAMIPAT GIAPQQPSPV VRSASATSTS SSQASLVGDV APPQAHAAST 420
  421 ILPSSSSYMQ QLGSVAGSGV NLHAAAVAAA AAAAAAAGSL PPTNSHGHGH GSHAHPHPHA 480
  481 HGHGHGHGHG IYAGHQHNVP ITDAQVAQVH LHKQGHRPLG RTQSAPLPLG HPMLTGAVQL 540
  541 NVVQTHYENS EAERQAYEHQ VVNQKVRQTV LTRSGAAAAA AAAAGVSVVR EAQLKEEDDD 600
  601 SAAEVMDLTD KKKPPKTVLT STIATSTSQN LPEALAAAAA AAAYRAPHNA SSNSASATKS 660
  661 GIKLRDQEYL QQQREQLLLL QQEEELAKSL MRPLSRTLSS PLVPLGPHGL SQIPDTGQQP 720
  721 APIATSSSAD HIPPVNLSLP HRQHRQLMST LYASQLRNHQ PSASGSPPHK VTTGLAYDPL 780
  781 MLKHSCICGD NAQHPEHSGR LQSVWARLNE TDLVKRCDRL RARKATQEEL QTVHTEAHAM 840
  841 LFGSNQCQLS RPKLENTLSA SFVRLSCGGL GVDLDTTWNE HHTATAARMA AGCVIDLALK 900
  901 TAKGDLRNGF AVVRPPGHHA EANLAMGFCF FNSIAIAAKL LRQRMPEVRR ILIVDWDVHH 960
  961 GNGTQQAFYQ SPDILYLSIH RHDDGNFFPG TGGPTECGSG AGLGFNVNIS WSGALNPPLG1020
 1021 DAEYIAAFRT VVMPIARSFN PDIVLVSSGF DAATGHPAPL GGYHVSPACF GFMTRELLQL1080
 1081 ANGKVVLALE GGYDLAAICD SAQECVRALL GDPAAPIAKA ELERPPCQNA INTLQKTIAI1140
 1141 QQTHWPCVRM LEHTVGLSAL ETLKVEHDES ETINAMAGLS MQTLSRDDSE EPMDQDETK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..274] PSI-BLAST 12.09691 Heavy meromyosin subfragment
    2 View Details [275..384] deduced N/A No confident structure predictions are available.
    3 View Details [385..620] PSI-BLAST 3.30103 Sec24
    4 View Details [621..763] deduced N/A No confident structure predictions are available.
    5 View Details [764..1199] PSI-BLAST 120.0 No description for 2nvrA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.70

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle